Fig. 5

Relative abundance of CDSs assigned to each eggNOG functional categories for commonly a/ 640 down and b/ 698 up-regulated E. amylovora genes in planta. The eggNOG functional categories are as follows: C, energy production and conversion; D, cell cycle control, cell division and chromosome partitioning; E, amino acid transport and metabolism; F, nucleotide transport and metabolism; G, carbohydrate transport and metabolism; H, coenzyme transport and metabolism; I, lipid transport and metabolism; J, translation; K, transcription; L, replication; M, cell wall/membrane/envelope biogenesis; N, cell motility; O, posttranslational modification, protein turnover, chaperones; P, inorganic ion transport and metabolism; Q, secondary metabolites biosynthesis, transport and catabolism; S, function unknown; T, signal transduction mechanisms; U, intracellular trafficking and secretion; V, defence mechanisms. ↑- over-represented; ↓ - under-represented COG categories calculated based on hypergeometric distribution at FDR < 0.05