Table 2 Functional classification of DEGs
From: Comparative transcriptome analysis of soybean response to bean pyralid larvae
Functional category | Pathways | HRK48/HRK0 | HSK48/HSK0 | HRK0/HSK0 | HRK48/HSK48 | ||||
|---|---|---|---|---|---|---|---|---|---|
up | down | up | down | up | down | up | down | ||
ROS removal | Peroxidases | 23 | 0 | 20 | 0 | 0 | 0 | 0 | 0 |
Polyphenol oxidase | 5 | 0 | 4 | 0 | 0 | 0 | 0 | 0 | |
Glutathione S transferases | 9 | 0 | 2 | 0 | 0 | 1 | 0 | 0 | |
Thioredoxin 1 | 3 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | |
Hormone metabolism | Jasmonate | 8 | 0 | 6 | 0 | 0 | 2 | 0 | 2 |
Ethylene | 22 | 2 | 14 | 0 | 1 | 0 | 1 | 1 | |
Abscisic acid | 1 | 0 | 2 | 0 | 0 | 2 | 0 | 1 | |
Auxin | 12 | 0 | 6 | 0 | 1 | 0 | 1 | 0 | |
Brassinosteroid | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | |
Cytokinin | 0 | 2 | 1 | 0 | 0 | 0 | 0 | 0 | |
Gibberelin | 3 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | |
Salicylic acid | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 1 | |
Signalling | Protein kinases | 17 | 0 | 6 | 1 | 7 | 26 | 8 | 7 |
Calcium | 6 | 1 | 3 | 5 | 4 | 15 | 4 | 1 | |
Stress | Biotic | 17 | 2 | 8 | 0 | 1 | 3 | 2 | 1 |
Biotic .signalling | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | |
Biotic.PR-proteins | 10 | 2 | 5 | 2 | 1 | 12 | 3 | 6 | |
Biotic. proteinase inhibitors | 8 | 0 | 7 | 0 | 0 | 0 | 3 | 0 | |
Abiotic | 2 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | |
Abiotic.heat | 6 | 0 | 4 | 2 | 0 | 6 | 0 | 2 | |
Abiotic.cold | 1 | 0 | 0 | 1 | 0 | 1 | 2 | 0 | |
Abiotic.drought/salt | 1 | 2 | 1 | 1 | 2 | 1 | 0 | 0 | |
Abiotic.touch/wounding | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | |
Abiotic.unspecified | 9 | 4 | 5 | 2 | 1 | 1 | 1 | 1 | |
Secondary metabolism | Isoprenoid | 6 | 0 | 6 | 0 | 0 | 1 | 0 | 1 |
Phenylpropanoid | 13 | 0 | 4 | 0 | 2 | 4 | 2 | 3 | |
Flavonoid | 22 | 0 | 4 | 0 | 0 | 3 | 1 | 1 | |
Cytochrome P450 | 10 | 1 | 2 | 0 | 1 | 1 | 1 | 0 | |
Cell wall | Simple phenol modification | 4 7 | 0 3 | 1 2 | 0 2 | 0 0 | 0 0 | 0 3 | 0 0 |