Table 3 Comparisons of small Drosophila melanogaster transcriptome assemblies of Oases, Trinity and kCombine with k=25 over different values of k-mer coverage cutoff c
c | Transcripts | n50 | Blast | Full | Spec | Unique | Transloc | Memory |
|---|---|---|---|---|---|---|---|---|
Oases | Â | Â | Â | Â | Â | Â | Â | Â |
10 | 41867 | 1743 | 24187 | 8444 | 91.6% | 36080 (86.2%) | 7026 (16.8%) | 128 GB |
20 | 38377 | 1164 | 21606 | 4922 | 88.1% | 34926 (91.0%) | 3830 (10.0%) | 128 GB |
kCombine(Oases) | Â | Â | Â | Â | Â | Â | Â | Â |
5 | 52282 | 1144 | 23573 | 7152 | 89.9% | 44118 (84.4%) | 9938 (19.0%) | 8 GB |
10 | 36813 | 939 | 20389 | 4430 | 88.3% | 32591 (88.5%) | 5272 (14.3%) | 8 GB |
Trinity | Â | Â | Â | Â | Â | Â | Â | Â |
5 | 35190 | 1313 | 24434 | 6177 | 95.7% | 32481 (92.3%) | 2664 (7.6%) | 512 GB |
10 | 29237 | 970 | 22388 | 3986 | 96.9% | 27883 (95.4%) | 978 (3.3%) | 512 GB |
kCombine(Trinity) | Â | Â | Â | Â | Â | Â | Â | Â |
3 | 34150 | 884 | 22746 | 4097 | 96.0% | 31540 (92.4%) | 2558 (7.5%) | 8 GB |
5 | 26535 | 753 | 20525 | 2932 | 96.4% | 24994 (94.2%) | 1214 (4.6%) | 8 GB |