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Table 3 Comparisons of small Drosophila melanogaster transcriptome assemblies of Oases, Trinity and kCombine with k=25 over different values of k-mer coverage cutoff c

From: A divide-and-conquer algorithm for large-scale de novo transcriptome assembly through combining small assemblies from existing algorithms

c Transcripts n50 Blast Full Spec Unique Transloc Memory
Oases         
10 41867 1743 24187 8444 91.6% 36080 (86.2%) 7026 (16.8%) 128 GB
20 38377 1164 21606 4922 88.1% 34926 (91.0%) 3830 (10.0%) 128 GB
kCombine(Oases)         
5 52282 1144 23573 7152 89.9% 44118 (84.4%) 9938 (19.0%) 8 GB
10 36813 939 20389 4430 88.3% 32591 (88.5%) 5272 (14.3%) 8 GB
Trinity         
5 35190 1313 24434 6177 95.7% 32481 (92.3%) 2664 (7.6%) 512 GB
10 29237 970 22388 3986 96.9% 27883 (95.4%) 978 (3.3%) 512 GB
kCombine(Trinity)         
3 34150 884 22746 4097 96.0% 31540 (92.4%) 2558 (7.5%) 8 GB
5 26535 753 20525 2932 96.4% 24994 (94.2%) 1214 (4.6%) 8 GB
  1. Notations are the same as in Table 2