Skip to main content

Advertisement

Table 1 Descriptive statistics for the RNA-Seq and mass spectrometry analyses utilizing the Vervet reference search database (REFdb, 19,255 gene entries) and the sample-specific databases (SSdb)

From: Proteomics in non-human primates: utilizing RNA-Seq data to improve protein identification by mass spectrometry in vervet monkeys

Sample RNA-Seq SSdb Entries Mass Spectra PSMs Peptide IDs
  RNA-Seq reads % reads aligned Genes Novel SJs   REFdb SSdb REFdb SSdb
1030 7,040,525 55.5 13,804 4069 80,003 26,525 26,680 9765 9702
1211 6,585,341 68.8 15,782 7171 79,381 27,288 27,673 10,532 10,527
1238 6,594,936 67.1 15,659 6595 78,444 19,600 19,898 9349 9354
1245 6,730,432 64.0 13,901 4089 80,281 29,143 29,193 10,503 10,463
1248 10,504,974 69.4 15,513 7429 80,221 22,205 22,479 9120 9162
1254 9,127,588 62.5 15,936 7641 79,675 23,655 23,738 9334 9385
1291 6,575,182 67.9 13,354 3653 79,960 30,623 30,722 11,478 11,652
1347 6,637,842 56.6 13,284 3147 78,791 17,284 17,037 8633 8575
1448 8,019,158 65.0 15,668 6419 71,853 15,612 15,561 7582 7593
1467 9,983,615 66.2 16,176 7305 78,781 20,101 20,162 9177 9223