Proteomics in non-human primates: utilizing RNA-Seq data to improve protein identification by mass spectrometry in vervet monkeys

Table 1 Descriptive statistics for the RNA-Seq and mass spectrometry analyses utilizing the Vervet reference search database (REFdb, 19,255 gene entries) and the sample-specific databases (SSdb)

Sample	RNA-Seq		SSdb Entries		Mass Spectra	PSMs		Peptide IDs
	RNA-Seq reads	% reads aligned	Genes	Novel SJs		REFdb	SSdb	REFdb	SSdb
1030	7,040,525	55.5	13,804	4069	80,003	26,525	26,680	9765	9702
1211	6,585,341	68.8	15,782	7171	79,381	27,288	27,673	10,532	10,527
1238	6,594,936	67.1	15,659	6595	78,444	19,600	19,898	9349	9354
1245	6,730,432	64.0	13,901	4089	80,281	29,143	29,193	10,503	10,463
1248	10,504,974	69.4	15,513	7429	80,221	22,205	22,479	9120	9162
1254	9,127,588	62.5	15,936	7641	79,675	23,655	23,738	9334	9385
1291	6,575,182	67.9	13,354	3653	79,960	30,623	30,722	11,478	11,652
1347	6,637,842	56.6	13,284	3147	78,791	17,284	17,037	8633	8575
1448	8,019,158	65.0	15,668	6419	71,853	15,612	15,561	7582	7593
1467	9,983,615	66.2	16,176	7305	78,781	20,101	20,162	9177	9223

ISSN: 1471-2164