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Table 2 DEPs specifically expressed in natural or Cytokinin induced parthenocarpic fruit

From: Proteomic insight into fruit set of cucumber (Cucumis sativus L.) suggests the cues of hormone-independent parthenocarpy

Protein ID

Top Hita

Descriptionb

Relative Biological Processesc

Expression fold of DEPs in parthenocarpic fruitd

Natural parthenocarpy specialized DEPs

 Csa1M024830.1

AT1G48630.1

RACK1B, RECEPTOR FOR ACTIVATED C KINASE 1B

Seed Germination and Early Seedling Development; shoot development (GO:0048367)

−1.97

 Csa1M025890.1★

AT5G46180.1

DELTA-OAT, ORNITHINE-DELTA-AMINOTRANSFERASE

Pollen germination and tube growth [86]; cellular amino acid biosynthetic process (GO:0008652)

85.50

 Csa1M025980.1

AT3G10920.1

MSD1, MANGANESE SUPEROXIDE DISMUTASE 1

Seed Germination [87]; female gametophyte development; programmed cell death

−1.94

 Csa2M223140.1

AT3G04840.1

40S ribosomal protein S3a-like protein

Pollen germination and tube growth [86]

2.58

 Csa2M338890.1

AT1G26880.1

60S ribosomal protein L34

Pollen germination and tube growth [86]

2.99

 Csa3M002370.1

AT4G35630.1

PHOSPHOSERINE AMINOTRANSFERASE 1, PSAT1

Serine biosynthesis; responses to cytokinin

−3.16

 Csa3M827370.1

AT3G01280.1

VOLTAGE DEPENDENT ANION CHANNEL 1, VDAC1

Female gametogenesis; pollen germination and tube growth [86]

−2.53

 Csa4M001980.1

AT1G02780.1

EMB2386, EMBRYO DEFECTIVE 2386

Pollen germination and tube growth [86]; embryonic development (GO:0009790)

3.02

 Csa4M012460.1

AT1G60710.1

Aldo/keto reductase family protein

Seed Germination and Floral Development

−2.65

 Csa4M036590.1★

AT4G39660.1

AGT2, ALANINE:GLYOXYLATE AMINOTRANSFERASE 2

Responses to brassinosteroids; cellular amino acid biosynthetic process (GO:0008652)

8.87

 Csa4M179090.1

AT4G33680.1

AGD2, ABERRANT GROWTH AND DEATH 2

Responses to cytokinin; pollen germination and tube growth (Wang et al. [86]); cell growth

−2.44

 Csa4M290220.1

AT1G09200.1

Histone H3

Cell cycle [88]; cell expansion and proliferation; male gametogenesis

−3.25

 Csa4M664520.1

AT1G76550.1

Fructose-6-phosphate 1-phosphotransferase

seed development [89]; glycolysis (GO:0006096)

2.29

 Csa6M193590.1

AT1G07660.1

Histone H4

Chromatin organization (GO:0006325)

−3.16

 Csa6M450410.1

AT2G36460.1

FBA6, FRUCTOSE-BISPHOSPHATE ALDOLASE 6

Seed Germination [87]; responses to cytokinin

−2.03

 Csa6M451470.1

AT3G52880.1

MDAR1, MONODEHYDROASCORBATE REDUCTASE 1

Pollen germination and tube growth [86]; Cell Wall Regeneration

−1.95

 Csa7M073540.1★

AT4G34100.1

CER9, ECERIFERUM 9

Seed Germination; pollen germination and tube growth [86]; Cell cycle [88]

7.44

 Csa7M407650.1

AT4G02060.1

PRL, PROLIFERA

Cell cycle and division [72]; GO:0007049)

3.66

 Csa7M450640.1★

AT1G67120.1

MDN1, MIDASIN 1

Seed germination and seedling development; female gametophyte development; cell proliferation

87.90

Cytokinin induced parthenocarpy specialized DEPs

 Csa1M003540.1

AT4G20360.1

RABE1B, RAB GTPASE HOMOLOG E1B

Seed Germination and development [87, 89]

2.55

 Csa1M031900.1

AT1G48410.1

AGO1, ARGONAUTE 1

Fruit development; cell division

−1.67

 Csa1M042700.1

AT3G18080.1

BGLU44, B-S GLUCOSIDASE 44

Female gametophyte development; Cell wall proteins

−1.80

 Csa1M229500.1

AT5G20250.1

DIN10, DARK INDUCIBLE 10

Seed germination and seedling development; pollen germination and tube growth [86]

1.78

 Csa1M573730.1

AT5G56680.1

EMB2755, EMBRYO DEFECTIVE 2755

Gametogenesis and embryo development (GO:0009793)

1.95

 Csa1M597740.1

AT5G20720.1

CPN21, CHAPERONIN 20

Seed development [89]; pollen germination and tube growth

1.55

 Csa1M604600.1

AT1G50480.1

THFS,10-FORMYLTETRAHYDROFOLATE SYNTHETASE

Seed development [89]; responses to cytokinin

2.88

 Csa2M139820.1★

AT1G07920.1

EF1α, Elongation factor 1-alpha

Pollen development; translational elongation (GO:0006414)

6.08

 Csa2M264020.1

AT4G34880.1

GAtA, Glutamyl-tRNA (Gln) amidotransferase subunit A

Translation (GO:0006412)

2.70

 Csa2M350200.1

AT1G24510.1

TCP-1/cpn60 chaperonin family protein

Plant cell death [90]

1.95

 Csa4M094000.1

AT3G29360.1

UGD2, UDP-GLUCOSE DEHYDROGENASE 2

Pollen germination and tube growth [86]; cell wall organization (GO:0007047)

3.98

 Csa4M496230.1

AT5G63860.1

UVR8, UVB-RESISTANCE 8

Cell cycle (GO:0007049)

−3.02

 Csa5M623870.1

AT5G07030.1

Aspartic proteinase nepenthesin-1

Re-arrangements of cell wall [91]

−2.44

 Csa5M644550.1

AT3G02530.1

TCP-1/cpn60 chaperonin family protein

Plant cell death [90]

1.85

 Csa6M439410.1

AT5G19440.1

Cinnamoyl CoA reductase-like protein

Seed development [89]; lignin biosynthetic pathway

−4.09

 Csa7M048110.1

AT3G14940.1

PPC3, PHOSPHOENOLPYRUVATE CARBOXYLASE 3,

Development of male gametophyte; Cell cycle [88]

2.75

 Csa7M075590.2

AT5G42650.1

AOS, ALLENE OXIDE SYNTHASE

Floral organ development; defense response (GO:0006952)

−2.65

 Csa7M390010.1

AT3G02080.1

40S ribosomal protein S19

Translation (GO:0006412)

2.55

 Csa7M405310.1

AT4G02290.1

GH9B13, GLYCOSYL HYDROLASE 9B13

Root development; cell wall organization (GO:0007047)

−2.42

  1. aHomologous search was conducted by BLASTP against the Arabidopsis Refseq database (http://www.arabidopsis.org/index.jsp). E-value was set to <1E-10. The Arabidopsis gene ID with highest score is picked for further analysis
  2. bThe proteins were annotated based on the public databases: Arabidopsis database (http://www.arabidopsis.org/index.jsp) and cucumber Refseq database (http://cucumber.genomics.org.cn/page/cucumber/index.jsp)
  3. cThe proposed biological processes were refer from the GO terms and related research reports of the top hit Arabidopsis genes
  4. dThe expression fold was calculated as the ratio of the protein expression in 2 dpa fruits vs. protein expression in 0 dpa fruit, P-value <0.05; The dramatically increased (fold >5) DEPs were marked with stars
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BMC Genomics

ISSN: 1471-2164

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