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Table 1 Prediction accuracy of DotcodeR on each dataset of simulated short genomes

From: Alignment-free comparative genomic screen for structured RNAs using coarse-grained secondary structure dot plots

Dataset

Negative data

SEN

SPC

PPV

NPV

MCC

Training

Gene-shuffled

0.906

0.930

0.070

0.999

0.070

 

Genome-shuffled

0.906

0.932

0.065

0.999

0.068

Test

Gene-shuffled

0.902

0.925

0.072

0.999

0.075

 

Genome-shuffled

0.902

0.947

0.087

0.999

0.053

  1. Here we used the window size of 120 nt, the step size of 30 nt and the cutoff of 20. Note that accuracy was calculated by averaging over all results of the families in each dataset
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BMC Genomics

ISSN: 1471-2164

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