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Table 1 Prediction accuracy of DotcodeR on each dataset of simulated short genomes

From: Alignment-free comparative genomic screen for structured RNAs using coarse-grained secondary structure dot plots

Dataset Negative data SEN SPC PPV NPV MCC
Training Gene-shuffled 0.906 0.930 0.070 0.999 0.070
  Genome-shuffled 0.906 0.932 0.065 0.999 0.068
Test Gene-shuffled 0.902 0.925 0.072 0.999 0.075
  Genome-shuffled 0.902 0.947 0.087 0.999 0.053
  1. Here we used the window size of 120 nt, the step size of 30 nt and the cutoff of 20. Note that accuracy was calculated by averaging over all results of the families in each dataset