Weighted likelihood inference of genomic autozygosity patterns in dense genotype data

BMC Genomics

Table 2 Populations included in Phase 3 of The 1000 Genomes Project

Population		Geographic region	N	Consanguinity^a
ID	Name	Geographic region	N	Frequency	Reference(s)
ESN	Esan	Africa	94	–	–
GWD	Gambian	Africa	109	–	–
LWK	Luhya	Africa	96	–	–
MSL	Mende	Africa	80	–	–
YRI	Yoruban	Africa	107	51.20%	[253]
GBR	British	Europe	89	0.40%	[254]
CEU	European American	Europe	97	0.20%	[255]
FIN	Finnish	Europe	98	0.17%	[256]
IBS	Iberian	Europe	107	1.99%	[257–261]
TSI	Toscani	Europe	104	–	–
BEB	Bengali	Central/South Asia	84	5.00%	[182]
GIH	Gujarati	Central/South Asia	101	4.90%	[182]
PJL	Punjabi	Central/South Asia	96	0.90%	[182]
STU	Sri Lankan Tamil	Central/South Asia	96	38.20%	[182]
ITU	Telugu	Central/South Asia	101	30.80%	[182]
CDX	Dai	East Asia	92	21.30%	[181]
JPT	Japanese	East Asia	103	4.80%
KHV	Kinh	East Asia	94	–	–
CHB	Northern Han	East Asia	101	1.16%	[181, 262, 263]
CHS	Southern Han	East Asia	102	3.43%	[181, 263]
ASW	African American	Admixed	55	–	–
ACB	Afro-Caribbean	Admixed	94	–	–
CLM	Colombian	Admixed	89	2.83%	[255, 257, 264]
MXL	Mexican American	Admixed	62	0.80%	[255, 257]
PEL	Peruvian	Admixed	84	1.90%	[255, 264, 265]
PUR	Puerto Rican	Admixed	101	3.30%	[260]

ISSN: 1471-2164