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Table 1 Summary of Polypogon fugax transcriptome sequencing, assembly, and annotation

From: Transcriptomics analysis of the flowering regulatory genes involved in the herbicide resistance of Asia minor bluegrass (Polypogon fugax)

 

Reference transcriptome

Total clean reads

275,659,060

Assembled unigenes

206,041

Average read length

1337

N50 contig size

1851

N90 contig size

705

Annotation in NR

153,591

Annotation in NT

145,977

Annotation in KO

121,526

Annotation in SwissProt

111,290

Annotation in GO

80,312

Annotation in COG

74,434

Annotation in Interpro

93,000

  1. NR, NCBI non-redundant protein sequences database
  2. NT, NCBI nucleotide sequences database
  3. KO, KEGG (Kyoto Encyclopedia of Genes and Genomes) Orthology database
  4. GO, Gene Ontology
  5. COG, Clusters of Orthologous Groups of Proteins
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BMC Genomics

ISSN: 1471-2164

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