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Table 2 Differentially expressed genes (DEGs) as candidate transcription factors (TFs) between the susceptible plants (SPs) and resistant plants (RPs) of Polypogon fugax at the early flowering stagea

From: Transcriptomics analysis of the flowering regulatory genes involved in the herbicide resistance of Asia minor bluegrass (Polypogon fugax)

Unigene ID

Contig length

Gene family

Gene annotations

ID in database

Log2Ratio

(UFR/UFS)

Padj

Log2 ratio

(TFR/TFS)

Padj

CL10710.contig2

1396

MADS

MIKC-type MADS-box transcription factor WM29B [Triticum aestivum]

CAM59077.1

2.44949

7.16E-07

2.08657

0.00886

CL19935.contig11

1314

MADS

VRN1 [Festuca arundinacea]

ACN81330.1

1.41482

0.65251

3.95796

0.05880

CL7805.contig1

1423

MADS

MADS3 [Lolium perenne]

AAO45875.1

6.75310

5.83E-09

4.31204

5.94E-05

CL19935.contig9

1496

MADS

MADS-box protein 1 [Lolium temulentum]

AAD10625.1

2.71062

1.03E-07

3.93220

1.90E-06

CL278.contig6

814

MADS

predicted protein [Hordeum vulgare subsp. vulgare]

BAK01668.1

2.79704

0.034962

4.56666

0.00195

CL15323.contig1

985

MADS

MADS-box transcription factor 42 [Brachypodium distachyon]

AIG21850.1

1.60674

0.38702

1.88285

0.20711

CL6626.contig8

1089

MADS

unnamed protein product [Triticum aestivum]

CDM85805.1

1.49045

0.17262

1.01250

0.38150

CL10951.contig2

1176

MADS

MADS-box transcription factor WM21B[Triticum aestivum]

AM502888.1

−1.65321

0.02961

−1.30507

0.22610

CL4600.contig2

1233

MADS

VRT2 [Festuca arundinacea]

ADK55060.1

4.11115

0.00056

5.05851

0.00019

CL19114.Contig2

1056

MADS

MADS-box transcription factor 31 [Aegilops tauschii]

EMT17017.1

5.10271

7.61E-05

4.99548

0.00040

CL3687.Contig1

1187

MYB

hypothetical protein OsJ_36546 [Oryza sativa Japonica Group]

EAZ20907.1

6.04532

0.00030

5.34815

0.00197

Unigene19990

1015

MYB

Myb-related protein MYBAS2 [Aegilops tauschii]

EMT18692.1

4.06133

1.33E-07

4.23625

9.57E-05

Unigene7488

1353

MYB

hypothetical protein SETIT_ 017851 mg [Setaria italica]

KQL30198.1

5.44547

0.00105

4.25490

0.01766

Unigene58296

2044

BHLH

predicted protein [Hordeum vulgare subsp. vulgare]

BAJ85853.1

3.22304

0.03804

5.82932

0.00086

CL9764.Contig4

1172

BHLH

hypothetical protein F775_42459 [Aegilops tauschii]

EMT14257.1

3.79240

0.01288

4.66703

0.01675

CL20691.Contig14

2701

GRAS

predicted protein [Hordeum vulgare subsp. vulgare]

BAJ89210.1

3.77490

5.83E-05

5.10209

0.00015

CL3809.Contig22

2464

GRAS

predicted protein [Hordeum vulgare subsp. vulgare]

BAJ97549.1

3.44933

3.96E-05

3.64527

0.00743

CL18402.contig2

1556

ABI3VP1

B3 domain-containing protein Os01g0234100-like [Brachypodium distachyon]

XP_010240699.1

5.06971

0.00733

4.55668

0.02181

CL12188.Contig2

4196

ABI3VP1

hypothetical protein OsI_35443 [Oryza sativa Indica Group]

EEC67837.1

5.77226

7.86E-07

4.04356

5.17E-05

Unigene13022

1367

ABI3VP1

unnamed protein product [Triticum aestivum]

CDM85878.1

5.75417

0.00076

5.08982

0.00602

Unigene51942

1567

AP2-EREBP

hypothetical protein BRADI_ 1 g46690 [Brachypodium distachyon]

KQK19167.1

6.70426

1.01E-23

7.43238

3.86E-14

Unigene12462

2057

AP2-EREBP

DRF-like transcription factor DRFL2a [Triticum aestivum]

ABC74510.1

9.51535

9.86E-13

9.17289

3.86E-11

CL8782.Contig4

1181

AP2-EREBP

ethylene-responsive transcription factor-like protein At4g13040 [Brachypodium distachyon]

XP_003574993.2

−1.89557

0.13175

4.77569

0.01210

CL1441.Contig20

1766

NAC

predicted protein [Hordeum vulgare subsp. vulgare]

BAK08125.1

8.03481

2.09E-08

6.60687

4.59E-08

Unigene25784

1076

NAC

hypothetical protein MNEG_0811 [Monoraphidium neglectum]

KIZ07145.1

6.80800

6.75E-06

6.49068

1.84E-05

CL21112.Contig3

1951

NAC

NAC transcription factor [Hordeum vulgare subsp. vulgare]

CBZ41156.1

4.96265

8.40E-08

7.80505

1.52E-07

Unigene31436

2102

NAC

predicted protein [Hordeum vulgare subsp. vulgare]

BAJ93083.1

6.13811

2.79E-07

5.17007

8.91E-08

  1. aLimitations of all significantly different expressed genes between the susceptible plants (SP) and resistant plants (RP) of Polypogon fugax are based on Padj < 1 and the absolute value of log2 ratio ≥ 1. The log2 ratio indicated the change of gene expression; a positive number means up-regulation and a negative one means down-regulatio
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BMC Genomics

ISSN: 1471-2164

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