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Table 1 Summary of RNA-editing sites in human lung and tracheobronchial epithelial cells

From: A comprehensive study on cellular RNA editing activity in response to infections with different subtypes of influenza a viruses

Subtype Host Time Postinfection Sequence Strategy Editing Type No. of Editing Sites Validated Sites from Replicates
H1N1 NHBE cells 0 h rep1 Paired end A-to-I 10,784 8735
H1N1 NHBE cells 0 h rep2 Paired end A-to-I 11,748
H1N1 NHBE cells 08 h rep1 Paired end A-to-I 11,129 9619
H1N1 NHBE cells 08 h rep2 Paired end A-to-I 18,165
H1N1 NHBE cells 24 h rep1 Paired end A-to-I 10,570 7506
H1N1 NHBE cells 24 h rep2 Paired end A-to-I 14,475
H1N1 NHBE cells 0 h rep1 Paired end C-to-U 3442 424
H1N1 NHBE cells 0 h rep2 Paired end C-to-U 3856
H1N1 NHBE cells 08 h rep1 Paired end C-to-U 4110 522
H1N1 NHBE cells 08 h rep2 Paired end C-to-U 5626
H1N1 NHBE cells 24 h rep1 Paired end C-to-U 3722 453
H1N1 NHBE cells 24 h rep2 Paired end C-to-U 4823
H7N9 A549cells 0 h rep1 Paired end A-to-I 35,070 8352
H7N9 A549 cells 0 h rep2 Paired end A-to-I 39,929
H7N9 A549 cells 1.5 h rep1 Paired end A-to-I 29,145 5650
H7N9 A549 cells 1.5 h rep2 Paired end A-to-I 27,806
H7N9 A549 cells 3 h rep1 Paired end A-to-I 25,280 6206
H7N9 A549 cells 3 h rep2 Paired end A-to-I 30,088
H7N9 A549 cells 7 h rep1 Paired end A-to-I 34,678 6855
H7N9 A549 cells 7 h rep2 Paired end A-to-I 39,780
H7N9 A549 cells 0 h rep1 Paired end C-to-U 5920 1437
H7N9 A549 cells 0 h rep2 Paired end C-to-U 6329
H7N9 A549 cells 1.5 h rep1 Paired end C-to-U 5384 1214
H7N9 A549 cells 1.5 h rep2 Paired end C-to-U 6796
H7N9 A549 cells 3 h rep1 Paired end C-to-U 5650 1209
H7N9 A549 cells 3 h rep2 Paired end C-to-U 5531
H7N9 A549 cells 7 h rep1 Paired end C-to-U 7577 1572
H7N9 A549 cells 7 h rep2 Paired end C-to-U 9198
H1N1 HTBE cells 03 h rep1 Paired end A-to-I 8781 5732
H1N1 HTBE cells 03 h rep2 Paired end A-to-I 7770
H1N1 HTBE cells 06 h rep1 Paired end A-to-I 17,190 16,329
H1N1 HTBE cells 06 h rep2 Paired end A-to-I 23,656
H1N1 HTBE cells 12 h rep1 Paired end A-to-I 21,626 17,912
H1N1 HTBE cells 12 h rep2 Paired end A-to-I 23,818
H1N1 HTBE cells 18 h rep1 Paired end A-to-I 26,027 20,066
H1N1 HTBE cells 18 h rep2 Paired end A-to-I 26,912
H1N1 HTBE cells 03 h rep1 Paired end C-to-U 4806 651
H1N1 HTBE cells 03 h rep2 Paired end C-to-U 5550
H1N1 HTBE cells 06 h rep1 Paired end C-to-U 8484 905
H1N1 HTBE cells 06 h rep2 Paired end C-to-U 11,521
H1N1 HTBE cells 12 h rep1 Paired end C-to-U 10,666 991
H1N1 HTBE cells 12 h rep2 Paired end C-to-U 11,537
H1N1 HTBE cells 18 h rep1 Paired end C-to-U 12,286 1000
H1N1 HTBE cells 18 h rep2 Paired end C-to-U 12,917
H3N2 HTBE cells 03 h rep1 Paired end A-to-I 18,094 13,873
H3N2 HTBE cells 03 h rep2 Paired end A-to-I 15,234
H3N2 HTBE cells 06 h rep1 Paired end A-to-I 14,735 11,367
H3N2 HTBE cells 06 h rep2 Paired end A-to-I 18,793
H3N2 HTBE cells 12 h rep1 Paired end A-to-I 8237 4809
H3N2 HTBE cells 12 h rep2 Paired end A-to-I 9272
H3N2 HTBE cells 18 h rep1 Paired end A-to-I 10,598 5604
H3N2 HTBE cells 18 h rep2 Paired end A-to-I 10,947
H3N2 HTBE cells 03 h rep1 Paired end C-to-U 8402 729
H3N2 HTBE cells 03 h rep2 Paired end C-to-U 7545
H3N2 HTBE cells 06 h rep1 Paired end C-to-U 7316 715
H3N2 HTBE cells 06 h rep2 Paired end C-to-U 9787
H3N2 HTBE cells 12 h rep1 Paired end C-to-U 5503 484
H3N2 HTBE cells 12 h rep2 Paired end C-to-U 6151
H3N2 HTBE cells 18 h rep1 Paired end C-to-U 7855 642
H3N2 HTBE cells 18 h rep2 Paired end C-to-U 7308
H5N1 HTBE cells 03 h rep1 Paired end A-to-I 8773 6196
H5N1 HTBE cells 03 h rep2 Paired end A-to-I 9455
H5N1 HTBE cells 06 h rep1 Paired end A-to-I 8604 2894
H5N1 HTBE cells 06 h rep2 Paired end A-to-I 5567
H5N1 HTBE cells 12 h rep1 Paired end A-to-I 6891 1287
H5N1 HTBE cells 12 h rep2 Paired end A-to-I 4308
H5N1 HTBE cells 18 h rep1 Paired end A-to-I 7486 1295
H5N1 HTBE cells 18 h rep2 Paired end A-to-I 5692
H5N1 HTBE cells 03 h rep1 Paired end C-to-U 5854 604
H5N1 HTBE cells 03 h rep2 Paired end C-to-U 6061
H5N1 HTBE cells 06 h rep1 Paired end C-to-U 6482 381
H5N1 HTBE cells 06 h rep2 Paired end C-to-U 4748
H5N1 HTBE cells 12 h rep1 Paired end C-to-U 5914 282
H5N1 HTBE cells 12 h rep2 Paired end C-to-U 4152
H5N1 HTBE cells 18 h rep1 Paired end C-to-U 7014 302
H5N1 HTBE cells 18 h rep2 Paired end C-to-U 5430