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Table 1 Summary of RNA-editing sites in human lung and tracheobronchial epithelial cells

From: A comprehensive study on cellular RNA editing activity in response to infections with different subtypes of influenza a viruses

Subtype

Host

Time Postinfection

Sequence Strategy

Editing Type

No. of Editing Sites

Validated Sites from Replicates

H1N1

NHBE cells

0 h rep1

Paired end

A-to-I

10,784

8735

H1N1

NHBE cells

0 h rep2

Paired end

A-to-I

11,748

H1N1

NHBE cells

08 h rep1

Paired end

A-to-I

11,129

9619

H1N1

NHBE cells

08 h rep2

Paired end

A-to-I

18,165

H1N1

NHBE cells

24 h rep1

Paired end

A-to-I

10,570

7506

H1N1

NHBE cells

24 h rep2

Paired end

A-to-I

14,475

H1N1

NHBE cells

0 h rep1

Paired end

C-to-U

3442

424

H1N1

NHBE cells

0 h rep2

Paired end

C-to-U

3856

H1N1

NHBE cells

08 h rep1

Paired end

C-to-U

4110

522

H1N1

NHBE cells

08 h rep2

Paired end

C-to-U

5626

H1N1

NHBE cells

24 h rep1

Paired end

C-to-U

3722

453

H1N1

NHBE cells

24 h rep2

Paired end

C-to-U

4823

H7N9

A549cells

0 h rep1

Paired end

A-to-I

35,070

8352

H7N9

A549 cells

0 h rep2

Paired end

A-to-I

39,929

H7N9

A549 cells

1.5 h rep1

Paired end

A-to-I

29,145

5650

H7N9

A549 cells

1.5 h rep2

Paired end

A-to-I

27,806

H7N9

A549 cells

3 h rep1

Paired end

A-to-I

25,280

6206

H7N9

A549 cells

3 h rep2

Paired end

A-to-I

30,088

H7N9

A549 cells

7 h rep1

Paired end

A-to-I

34,678

6855

H7N9

A549 cells

7 h rep2

Paired end

A-to-I

39,780

H7N9

A549 cells

0 h rep1

Paired end

C-to-U

5920

1437

H7N9

A549 cells

0 h rep2

Paired end

C-to-U

6329

H7N9

A549 cells

1.5 h rep1

Paired end

C-to-U

5384

1214

H7N9

A549 cells

1.5 h rep2

Paired end

C-to-U

6796

H7N9

A549 cells

3 h rep1

Paired end

C-to-U

5650

1209

H7N9

A549 cells

3 h rep2

Paired end

C-to-U

5531

H7N9

A549 cells

7 h rep1

Paired end

C-to-U

7577

1572

H7N9

A549 cells

7 h rep2

Paired end

C-to-U

9198

H1N1

HTBE cells

03 h rep1

Paired end

A-to-I

8781

5732

H1N1

HTBE cells

03 h rep2

Paired end

A-to-I

7770

H1N1

HTBE cells

06 h rep1

Paired end

A-to-I

17,190

16,329

H1N1

HTBE cells

06 h rep2

Paired end

A-to-I

23,656

H1N1

HTBE cells

12 h rep1

Paired end

A-to-I

21,626

17,912

H1N1

HTBE cells

12 h rep2

Paired end

A-to-I

23,818

H1N1

HTBE cells

18 h rep1

Paired end

A-to-I

26,027

20,066

H1N1

HTBE cells

18 h rep2

Paired end

A-to-I

26,912

H1N1

HTBE cells

03 h rep1

Paired end

C-to-U

4806

651

H1N1

HTBE cells

03 h rep2

Paired end

C-to-U

5550

H1N1

HTBE cells

06 h rep1

Paired end

C-to-U

8484

905

H1N1

HTBE cells

06 h rep2

Paired end

C-to-U

11,521

H1N1

HTBE cells

12 h rep1

Paired end

C-to-U

10,666

991

H1N1

HTBE cells

12 h rep2

Paired end

C-to-U

11,537

H1N1

HTBE cells

18 h rep1

Paired end

C-to-U

12,286

1000

H1N1

HTBE cells

18 h rep2

Paired end

C-to-U

12,917

H3N2

HTBE cells

03 h rep1

Paired end

A-to-I

18,094

13,873

H3N2

HTBE cells

03 h rep2

Paired end

A-to-I

15,234

H3N2

HTBE cells

06 h rep1

Paired end

A-to-I

14,735

11,367

H3N2

HTBE cells

06 h rep2

Paired end

A-to-I

18,793

H3N2

HTBE cells

12 h rep1

Paired end

A-to-I

8237

4809

H3N2

HTBE cells

12 h rep2

Paired end

A-to-I

9272

H3N2

HTBE cells

18 h rep1

Paired end

A-to-I

10,598

5604

H3N2

HTBE cells

18 h rep2

Paired end

A-to-I

10,947

H3N2

HTBE cells

03 h rep1

Paired end

C-to-U

8402

729

H3N2

HTBE cells

03 h rep2

Paired end

C-to-U

7545

H3N2

HTBE cells

06 h rep1

Paired end

C-to-U

7316

715

H3N2

HTBE cells

06 h rep2

Paired end

C-to-U

9787

H3N2

HTBE cells

12 h rep1

Paired end

C-to-U

5503

484

H3N2

HTBE cells

12 h rep2

Paired end

C-to-U

6151

H3N2

HTBE cells

18 h rep1

Paired end

C-to-U

7855

642

H3N2

HTBE cells

18 h rep2

Paired end

C-to-U

7308

H5N1

HTBE cells

03 h rep1

Paired end

A-to-I

8773

6196

H5N1

HTBE cells

03 h rep2

Paired end

A-to-I

9455

H5N1

HTBE cells

06 h rep1

Paired end

A-to-I

8604

2894

H5N1

HTBE cells

06 h rep2

Paired end

A-to-I

5567

H5N1

HTBE cells

12 h rep1

Paired end

A-to-I

6891

1287

H5N1

HTBE cells

12 h rep2

Paired end

A-to-I

4308

H5N1

HTBE cells

18 h rep1

Paired end

A-to-I

7486

1295

H5N1

HTBE cells

18 h rep2

Paired end

A-to-I

5692

H5N1

HTBE cells

03 h rep1

Paired end

C-to-U

5854

604

H5N1

HTBE cells

03 h rep2

Paired end

C-to-U

6061

H5N1

HTBE cells

06 h rep1

Paired end

C-to-U

6482

381

H5N1

HTBE cells

06 h rep2

Paired end

C-to-U

4748

H5N1

HTBE cells

12 h rep1

Paired end

C-to-U

5914

282

H5N1

HTBE cells

12 h rep2

Paired end

C-to-U

4152

H5N1

HTBE cells

18 h rep1

Paired end

C-to-U

7014

302

H5N1

HTBE cells

18 h rep2

Paired end

C-to-U

5430

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BMC Genomics

ISSN: 1471-2164

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