Fig. 1
From: A-GAME: improving the assembly of pooled functional metagenomics sequence data
Schematic of workflows for the analysis of metagenomic eDNA data available in A-GAME. Bioinformatics analysis of functional metagenomics data requires pre-processing of raw data, sequence assembly and post-processing of contigs, gene model prediction and functional annotation. A-GAME offers 4 pre-configured workflows, Fosmid1 to Fosmid4, that automate all the steps of the analysis and differ only through the combination of tools used. Schematic of the 4 workflows are represented in the form of flow diagrams, tools used to perform individual steps are reported in red