From: A-GAME: improving the assembly of pooled functional metagenomics sequence data
Insert assignment based on end-tags | Completeness | Computational requirements | |||||||
---|---|---|---|---|---|---|---|---|---|
Completea | 2 of 2 endsb | 1 of 1 endsc | Partiald | % assemblede | % of reference proteinsf | Assembly N50 | CPU time (h) | RAM peak (Gb) | |
original assembly | 40 | 6 | 10 | 11 | 100.00 | 100.00 | 36,113 | NA | NA |
SPAdes (F1) | 34 | 13 | 9 | 11 | 88.16 | 86.35 | 34,329 | 2.03 | 5.3 |
Velvet (F2) | 18 | 27 | 10 | 12 | 66.58 | 64.79 | 32,942 | 1.67 | 6.61 |
MEGAHIT (F3) | 30 | 19 | 8 | 10 | 95.14 | 92.13 | 34,446 | 1.21 | 3.22 |
MetaVelvet (F4) | 19 | 26 | 9 | 13 | 74.64 | 73.38 | 33,150 | 1.75 | 7.01 |
meta-SPAdes (F5) | 34 | 13 | 9 | 11 | 88.16 | 86.35 | 34,329 | 2.03 | 5.3 |
MOCAT2 | 19 | 27 | 8 | 13 | 67.62 | 65.92 | 25,246 | 1.91 | 4.51 |
Parallel META2 | 12 | 34 | 6 | 15 | 40.48 | 37.87 | 26,408 | 2.36 | 3.11 |
Original from LAM et al | 19 | 28 | 7 | 13 | 72.47 | 69.97 | 33,347 | NA | NA |