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Table 3 Summary of BLAST comparisons

From: The gonadal transcriptome of the unisexual Amazon molly Poecilia formosa in comparison to its sexual ancestors, Poecilia mexicana and Poecilia latipinna

Taxa   Entries BLAST algorithm Poecilia formosa Poecilia latipinna Poecilia mexicana
Poecilia formosa cDNA 30,958 tblastx 67,957 (63.56%) 63,547 (55.17%) 74,800 (56.23%)
DNA 3985 blastn 106,300 (99.4 2%) 114,516 (99.43%) 131,651 (98.97%)
protein 30,898 blastx 49,267 (46.08%) 48,170 (41.82%) 58,574 (44.03%)
Poecilia mexicana DNA 18,105 blastn 106,151(99.28%) 113,876 (98.87%) 131,866 (99.13%)
protein 47,406 blastx 51,032 (47.73%) 49,608 (43.07%) 60,442 (45.44%)
Poecilia latipinna DNA 17,988 blastn 106,127 (99.26%) 114,721 (99.61%) 130,691 (98.25%)
protein 47,072 blastx 51,096 (47.79%) 49,757 (43.20%) 60,227 (45.27%)
Poecilia reticulata DNA 43,715 blastn 49,894 (47.73%) 48,762 (42.34%) 59,326 (44.60%)
protein 2768 blastx 100,357 (93.86%) 107,025 (92.92%) 122,599 (92.13%)
Xiphophorus maculatus cDNA 20,482 tblastx 67,957 (63.56%) 63,547 (55.17%) 74,800 (56.23%)
DNA 20,632 blastn 106,300 (99.42%) 114,516 (99.43%) 131,651 (98.97%)
protein 20,454 blastx 49,267 (46.08%) 48,170 (41.82%) 58,574 (44.03%)
Oryzias latipes cDNA 24,675 tblastx 39,246 (36.71%) 40,351 (35.03%) 49,354 (37.10%)
DNA 7189 blastn 15,343 (14.35%) 16,805 (14.59%) 21,320 (16.03%)
protein 24,674 blastx 38,139 (35.67%) 38,839 (33.72%) 47,559 (35.75%)
Danio rerio cDNA 48,435 tblastx 37,939 (35.48%) 39,132 (33.98%) 47,942 (36.04%)
DNA 1133 blastn 2155 (2.02%) 3066 (2.66%) 4005 (3.01%)
protein 43,153 blastx 37,216 (34.81%) 38,463 (33.40%) 46,709 (35.11%)
Swiss-Prot protein 547,964 blastx 56,085 (52.45%) 53,528 (46.48%) 64,569 (48.54%)
  1. For each taxon, we show the number of the sequences of the cDNA/DNA (toplevel) and protein databases, the BLAST algorithm used, and the percentage of matched sequences. cDNA resources were utilized when available for the respective species