Table 3 Summary of BLAST comparisons
Taxa | Â | Entries | BLAST algorithm | Poecilia formosa | Poecilia latipinna | Poecilia mexicana |
|---|---|---|---|---|---|---|
Poecilia formosa | cDNA | 30,958 | tblastx | 67,957 (63.56%) | 63,547 (55.17%) | 74,800 (56.23%) |
DNA | 3985 | blastn | 106,300 (99.4 2%) | 114,516 (99.43%) | 131,651 (98.97%) | |
protein | 30,898 | blastx | 49,267 (46.08%) | 48,170 (41.82%) | 58,574 (44.03%) | |
Poecilia mexicana | DNA | 18,105 | blastn | 106,151(99.28%) | 113,876 (98.87%) | 131,866 (99.13%) |
protein | 47,406 | blastx | 51,032 (47.73%) | 49,608 (43.07%) | 60,442 (45.44%) | |
Poecilia latipinna | DNA | 17,988 | blastn | 106,127 (99.26%) | 114,721 (99.61%) | 130,691 (98.25%) |
protein | 47,072 | blastx | 51,096 (47.79%) | 49,757 (43.20%) | 60,227 (45.27%) | |
Poecilia reticulata | DNA | 43,715 | blastn | 49,894 (47.73%) | 48,762 (42.34%) | 59,326 (44.60%) |
protein | 2768 | blastx | 100,357 (93.86%) | 107,025 (92.92%) | 122,599 (92.13%) | |
Xiphophorus maculatus | cDNA | 20,482 | tblastx | 67,957 (63.56%) | 63,547 (55.17%) | 74,800 (56.23%) |
DNA | 20,632 | blastn | 106,300 (99.42%) | 114,516 (99.43%) | 131,651 (98.97%) | |
protein | 20,454 | blastx | 49,267 (46.08%) | 48,170 (41.82%) | 58,574 (44.03%) | |
Oryzias latipes | cDNA | 24,675 | tblastx | 39,246 (36.71%) | 40,351 (35.03%) | 49,354 (37.10%) |
DNA | 7189 | blastn | 15,343 (14.35%) | 16,805 (14.59%) | 21,320 (16.03%) | |
protein | 24,674 | blastx | 38,139 (35.67%) | 38,839 (33.72%) | 47,559 (35.75%) | |
Danio rerio | cDNA | 48,435 | tblastx | 37,939 (35.48%) | 39,132 (33.98%) | 47,942 (36.04%) |
DNA | 1133 | blastn | 2155 (2.02%) | 3066 (2.66%) | 4005 (3.01%) | |
protein | 43,153 | blastx | 37,216 (34.81%) | 38,463 (33.40%) | 46,709 (35.11%) | |
Swiss-Prot | protein | 547,964 | blastx | 56,085 (52.45%) | 53,528 (46.48%) | 64,569 (48.54%) |