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Table 4 Genes associated with meiosis, their Uniprot accession ID and the number of the corresponding transcripts in the Amazon molly (P. formosa: Pfor), the Sailfin molly (P. latipinna: Plat) and Atlantic molly (P. mexicana: Pmex) transcriptomes

From: The gonadal transcriptome of the unisexual Amazon molly Poecilia formosa in comparison to its sexual ancestors, Poecilia mexicana and Poecilia latipinna

Gene Description Accession number Number of transcripts
Pfor Pmex Plat
ago1 Argonaute 1, Eukaryotic translation initiation factor 2C 1 Q8CJG1 7 13 10
ago2 Argonaute 2, Eukaryotic translation initiation factor 2C 2 Q8CJG0 12 24 20
ago3 Argonaute 3, Eukaryotic translation initiation factor 2C 3 Q9H9G7 31 38 55
ago4 Argonaute 4, Eukaryotic translation initiation factor 2C 4 Q9HCK5 20 16 21
ccnA1 Cyclin-A1 Q92161 4 2 9
ccnA2 Cyclin-A2 P30274 3 4 6
ccnB1ip1 Cyclin B1 interacting protein 1 Q9NPC3 0 1 1
ccnC Cyclin-C Q28F72 3 3 5
cdk1 Cell division protein kinase/Cyclin-dependent kinase 1 Q9DG98 38 73 52
cdk2 Cell division protein kinase/Cyclin-dependent kinase 2 P43450 8 23 5
cdk4 Cyclin-dependent kinase 4 Q91727 12 3 5
cdk7 Cyclin-dependent kinase 7 P51953 4 2 3
cdk10 Cell division protein kinase/Cyclin-dependent kinase 10 Q2TBL8 4 7 5
cdk14 Cell division protein kinase/Cyclin-dependent kinase 14 B0VXL7 59 173 110
cdk16 Cell division protein kinase/Cyclin-dependent kinase 16 Q00536 19 19 9
dmc1* Meiotic recombination protein DMC1 Q61880 1 3 2
fkbp6* Inactive peptidyl-prolyl cis-trans isomerase FKBP6 Q91XW8 1 1 2
hfm1 Probable ATP-dependent DNA helicase HFM1 A2PYH4 14 41 27
hormad1* HORMA domain-containing protein 1 Q86X24 3 2 2
hormad2* HORMA domain-containing protein 2 Q8N7B1 0 0 0
m1ap Meiosis 1 arrest protein Q9Z0E1 67 44 65
majin* Membrane-anchored junction protein Q9D992 11 28 18
marf1 Meiosis arrest female protein 1 Q8BJ34 16 29 12
mcm2 DNA helicase MCM2, Minichromosome maintenance protein 2 Q6DIH3 13 29 8
mcm3 DNA helicase MCM3, Minichromosome maintenance protein 3 Q5ZMN2 3 9 11
mcm4 DNA helicase MCM4, Minichromosome maintenance protein 4 P33991 2 2 4
mcm4B Minichromosome maintenance protein 4-B P30664 1 1 2
mcm5 DNA helicase MCM5, Minichromosome maintenance 5 Q561P5 9 20 9
mcm6 DNA helicase MCM6, Minichromosome maintenance 6 Q14566 4 10 11
mcm7 DNA helicase MCM7, Minichromosome maintenance 7 Q6NX31 1 2 1
mcm8 DNA helicase MCM8, Minichromosome maintenance 8 Q9UJA3 20 74 21
mcm9 DNA helicase MCM9, Minichromosome maintenance 9 Q6NRM6 16 50 14
mei1* Meiosis inhibitor protein 1 Q5TIA1 28 55 64
mei4* Meiotic double-stranded break formation protein 4 Q8BRM6 17 41 56
meiob* Meiosis-specific with OB domain-containing protein Q9D513 6 4 15
meioc* Meiosis-specific coiled-coil domain-containing protein A2AG06 3 4 5
mlh1* DNA mismatch repair protein Mlh1, MutL protein homolog 1 P40692 11 15 10
mlh3* DNA mismatch repair protein Mlh3, MutL protein homolog 3 Q9UHC1 9 14 6
mnd1* Meiotic nuclear division protein 1 homolog Q32L19 40 183 80
mns1* Meiosis-specific nuclear structural protein 1 Q6PBA8 6 6 4
mre11 Double-strand break repair protein MRE11 Q9W6K1 9 6 6
msh2* DNA mismatch repair protein Msh2, MutS protein homolog 2 Q5XXB5 18 29 31
msh3* DNA mismatch repair protein Msh3, MutS protein homolog 3 P20585 15 37 33
msh4* DNA mismatch repair protein Msh4, MutS protein homolog 4 O15457 5 1 6
msh5* DNA mismatch repair protein Msh5, MutS protein homolog 5 O43196 6 8 6
msh6* DNA mismatch repair protein Msh6, MutS protein homolog 6 P52701 5 7 4
nbn Nibrin O60934 6 9 4
piwil1 Piwi-like protein 1 Q8UVX0 5 2 4
piwil2 Piwi-like protein 2 A6P7L8 20 27 19
pms1 PMS1 protein homolog 1 P54277 32 51 22
pms2 DNA mismatch repair protein (endonuclease) PMS2 P54278 6 4 5
prdm9 Histone-lysine N-methyltransferase Q96EQ9 5 6 7
psmc3ip* Homologous-pairing protein 2 homolog (HOP2) Q63ZL2 2 1 1
rad1 Cell cycle checkpoint protein RAD1 Q5R7X9 9 4 3
rad21* Double-strand-break repair protein rad21 homolog O60216 34 39 33
rad50 DNA repair protein RAD50 P70388 3 5 4
rad51 DNA repair protein RAD51 homolog 1 Q06609 5 2 3
rad51B* DNA repair protein RAD51 homolog 2/B Q91917 0 15 3
rad51C* DNA repair protein RAD51 homolog 3/C O43502 2 1 1
rad51D* DNA repair protein RAD51 homolog 4/D O75771 31 27 189
rad52 DNA repair protein RAD52 homolog P39022 1 3 1
rad54A* DNA repair and recombination protein RAD54-like Q92698 5 12 10
rad54B* DNA repair and recombination protein RAD54B Q9DG67 20 19 28
rad9A Cell cycle checkpoint control protein RAD9A Q99638 4 6 8
rad9B Cell cycle checkpoint control protein RAD9B Q6WBX8 7 20 25
rec8* Meiotic recombination protein REC8 O95072 20 39 180
rec114* Meiotic recombination protein REC114 Q7Z4M0 0 2 2
recQl1 ATP-dependent DNA helicase Q1 Q9Z129 30 115 82
recQl4 ATP-dependent DNA helicase Q4 O94761 78 49 63
recQl5 ATP-dependent DNA helicase Q5 O94762 9 8 6
rmi1 RecQ-mediated genome instability protein 1 A4IF98 3 2 2
rmi2 RecQ-mediated genome instability protein 2 Q5ZM20 4 2 2
rnf212 Ring finger protein 212 / Probable E3 SUMO-protein ligase F6TQD1 11 9 6
sfr1* SWI5 Dependent Homologous Recombination Repair Protein 1 B7ZD04 4 1 1
sgo2 Shugoshin 2 Q7TSY8 9 5 11
smarca2 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 Q6DIC0 44 80 77
smarca4 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 4 A7Z019 17 29 36
smc1a* Structural maintenance of chromosomes protein 1A Q9CU62 6 4 4
smc1b* Structural maintenance of chromosomes protein 1B Q8NDV3 10 75 17
smc2* Structural maintenance of chromosomes protein 2 P50533 5 8 4
smc3* Structural maintenance of chromosomes protein 3 Q9CW03 29 47 18
smc4* Structural maintenance of chromosomes protein 4 P50532 9 8 8
smc5* Structural maintenance of chromosomes protein 5 Q802R9 3 1 4
smc6* Structural maintenance of chromosomes protein 6 Q6P9I7 36 54 48
smchd1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 A6NHR9 10 19 24
spdya-A Speedy protein 1-A Q9PU13 3 1 5
spo11* Meiotic recombination protein Q9Y5K1 5 18 3
stag1* Cohesin subunit SA-1 Q8WVM7 18 45 36
stag2* Cohesin subunit SA-2 Q8N3U4 18 27 19
stag3* Cohesin subunit SA-3 O70576 19 12 24
stra8 Stimulated by retinoic acid gene 8 protein P70278 0 0 0
syce1 Synaptonemal complex central element protein 1 Q8N0S2 1 1 1
syce2* Synaptonemal complex central element protein 2 Q505B8 10 6 8
syce3* Synaptonemal complex central element protein 3 B5KM66 1 2 1
sycp1 Synaptonemal complex protein 1 Q62209 0 4 6
sycp2 Synaptonemal complex protein 2 Q9CUU3 8 8 6
sycp3 Synaptonemal complex protein 3 P70281 6 15 2
terb1* Telomere repeats-binding bouquet formation protein 1 Q8NA31 5 3 3
terb2* Telomere repeats-binding bouquet formation protein 2 Q9D494 2 1 1
tex11* Testis-expressed sequence 11 protein Q8IYF3 43 53 46
TOP6BL Type 2 DNA topoisomerase 6 subunit B-like Q8N6T0 18 43 9
trip13 Pachytene checkpoint protein 2 homolog Q15645 5 2 7
wWee2 Wee1-like protein kinase 2 Q66JT0 10 36 12
xrcc1 DNA repair protein XRCC1 Q60596 3 2 2
xrcc2* DNA repair protein XRCC2 Q9CX47 9 8 21
xrcc3* DNA repair protein XRCC3 Q08DH8 4 3 2
xrcc4 DNA repair protein XRCC4 Q924T3 27 52 23
zmcm3 Zygotic minichromosome maintenance protein 3 Q7ZXZ0 2 5 1
  1. Genes specific for meiosis are labeled with an asterisk (*)