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Table 4 Genes associated with meiosis, their Uniprot accession ID and the number of the corresponding transcripts in the Amazon molly (P. formosa: Pfor), the Sailfin molly (P. latipinna: Plat) and Atlantic molly (P. mexicana: Pmex) transcriptomes

From: The gonadal transcriptome of the unisexual Amazon molly Poecilia formosa in comparison to its sexual ancestors, Poecilia mexicana and Poecilia latipinna

Gene

Description

Accession number

Number of transcripts

Pfor

Pmex

Plat

ago1

Argonaute 1, Eukaryotic translation initiation factor 2C 1

Q8CJG1

7

13

10

ago2

Argonaute 2, Eukaryotic translation initiation factor 2C 2

Q8CJG0

12

24

20

ago3

Argonaute 3, Eukaryotic translation initiation factor 2C 3

Q9H9G7

31

38

55

ago4

Argonaute 4, Eukaryotic translation initiation factor 2C 4

Q9HCK5

20

16

21

ccnA1

Cyclin-A1

Q92161

4

2

9

ccnA2

Cyclin-A2

P30274

3

4

6

ccnB1ip1

Cyclin B1 interacting protein 1

Q9NPC3

0

1

1

ccnC

Cyclin-C

Q28F72

3

3

5

cdk1

Cell division protein kinase/Cyclin-dependent kinase 1

Q9DG98

38

73

52

cdk2

Cell division protein kinase/Cyclin-dependent kinase 2

P43450

8

23

5

cdk4

Cyclin-dependent kinase 4

Q91727

12

3

5

cdk7

Cyclin-dependent kinase 7

P51953

4

2

3

cdk10

Cell division protein kinase/Cyclin-dependent kinase 10

Q2TBL8

4

7

5

cdk14

Cell division protein kinase/Cyclin-dependent kinase 14

B0VXL7

59

173

110

cdk16

Cell division protein kinase/Cyclin-dependent kinase 16

Q00536

19

19

9

dmc1*

Meiotic recombination protein DMC1

Q61880

1

3

2

fkbp6*

Inactive peptidyl-prolyl cis-trans isomerase FKBP6

Q91XW8

1

1

2

hfm1

Probable ATP-dependent DNA helicase HFM1

A2PYH4

14

41

27

hormad1*

HORMA domain-containing protein 1

Q86X24

3

2

2

hormad2*

HORMA domain-containing protein 2

Q8N7B1

0

0

0

m1ap

Meiosis 1 arrest protein

Q9Z0E1

67

44

65

majin*

Membrane-anchored junction protein

Q9D992

11

28

18

marf1

Meiosis arrest female protein 1

Q8BJ34

16

29

12

mcm2

DNA helicase MCM2, Minichromosome maintenance protein 2

Q6DIH3

13

29

8

mcm3

DNA helicase MCM3, Minichromosome maintenance protein 3

Q5ZMN2

3

9

11

mcm4

DNA helicase MCM4, Minichromosome maintenance protein 4

P33991

2

2

4

mcm4B

Minichromosome maintenance protein 4-B

P30664

1

1

2

mcm5

DNA helicase MCM5, Minichromosome maintenance 5

Q561P5

9

20

9

mcm6

DNA helicase MCM6, Minichromosome maintenance 6

Q14566

4

10

11

mcm7

DNA helicase MCM7, Minichromosome maintenance 7

Q6NX31

1

2

1

mcm8

DNA helicase MCM8, Minichromosome maintenance 8

Q9UJA3

20

74

21

mcm9

DNA helicase MCM9, Minichromosome maintenance 9

Q6NRM6

16

50

14

mei1*

Meiosis inhibitor protein 1

Q5TIA1

28

55

64

mei4*

Meiotic double-stranded break formation protein 4

Q8BRM6

17

41

56

meiob*

Meiosis-specific with OB domain-containing protein

Q9D513

6

4

15

meioc*

Meiosis-specific coiled-coil domain-containing protein

A2AG06

3

4

5

mlh1*

DNA mismatch repair protein Mlh1, MutL protein homolog 1

P40692

11

15

10

mlh3*

DNA mismatch repair protein Mlh3, MutL protein homolog 3

Q9UHC1

9

14

6

mnd1*

Meiotic nuclear division protein 1 homolog

Q32L19

40

183

80

mns1*

Meiosis-specific nuclear structural protein 1

Q6PBA8

6

6

4

mre11

Double-strand break repair protein MRE11

Q9W6K1

9

6

6

msh2*

DNA mismatch repair protein Msh2, MutS protein homolog 2

Q5XXB5

18

29

31

msh3*

DNA mismatch repair protein Msh3, MutS protein homolog 3

P20585

15

37

33

msh4*

DNA mismatch repair protein Msh4, MutS protein homolog 4

O15457

5

1

6

msh5*

DNA mismatch repair protein Msh5, MutS protein homolog 5

O43196

6

8

6

msh6*

DNA mismatch repair protein Msh6, MutS protein homolog 6

P52701

5

7

4

nbn

Nibrin

O60934

6

9

4

piwil1

Piwi-like protein 1

Q8UVX0

5

2

4

piwil2

Piwi-like protein 2

A6P7L8

20

27

19

pms1

PMS1 protein homolog 1

P54277

32

51

22

pms2

DNA mismatch repair protein (endonuclease) PMS2

P54278

6

4

5

prdm9

Histone-lysine N-methyltransferase

Q96EQ9

5

6

7

psmc3ip*

Homologous-pairing protein 2 homolog (HOP2)

Q63ZL2

2

1

1

rad1

Cell cycle checkpoint protein RAD1

Q5R7X9

9

4

3

rad21*

Double-strand-break repair protein rad21 homolog

O60216

34

39

33

rad50

DNA repair protein RAD50

P70388

3

5

4

rad51

DNA repair protein RAD51 homolog 1

Q06609

5

2

3

rad51B*

DNA repair protein RAD51 homolog 2/B

Q91917

0

15

3

rad51C*

DNA repair protein RAD51 homolog 3/C

O43502

2

1

1

rad51D*

DNA repair protein RAD51 homolog 4/D

O75771

31

27

189

rad52

DNA repair protein RAD52 homolog

P39022

1

3

1

rad54A*

DNA repair and recombination protein RAD54-like

Q92698

5

12

10

rad54B*

DNA repair and recombination protein RAD54B

Q9DG67

20

19

28

rad9A

Cell cycle checkpoint control protein RAD9A

Q99638

4

6

8

rad9B

Cell cycle checkpoint control protein RAD9B

Q6WBX8

7

20

25

rec8*

Meiotic recombination protein REC8

O95072

20

39

180

rec114*

Meiotic recombination protein REC114

Q7Z4M0

0

2

2

recQl1

ATP-dependent DNA helicase Q1

Q9Z129

30

115

82

recQl4

ATP-dependent DNA helicase Q4

O94761

78

49

63

recQl5

ATP-dependent DNA helicase Q5

O94762

9

8

6

rmi1

RecQ-mediated genome instability protein 1

A4IF98

3

2

2

rmi2

RecQ-mediated genome instability protein 2

Q5ZM20

4

2

2

rnf212

Ring finger protein 212 / Probable E3 SUMO-protein ligase

F6TQD1

11

9

6

sfr1*

SWI5 Dependent Homologous Recombination Repair Protein 1

B7ZD04

4

1

1

sgo2

Shugoshin 2

Q7TSY8

9

5

11

smarca2

SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2

Q6DIC0

44

80

77

smarca4

SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 4

A7Z019

17

29

36

smc1a*

Structural maintenance of chromosomes protein 1A

Q9CU62

6

4

4

smc1b*

Structural maintenance of chromosomes protein 1B

Q8NDV3

10

75

17

smc2*

Structural maintenance of chromosomes protein 2

P50533

5

8

4

smc3*

Structural maintenance of chromosomes protein 3

Q9CW03

29

47

18

smc4*

Structural maintenance of chromosomes protein 4

P50532

9

8

8

smc5*

Structural maintenance of chromosomes protein 5

Q802R9

3

1

4

smc6*

Structural maintenance of chromosomes protein 6

Q6P9I7

36

54

48

smchd1

Structural maintenance of chromosomes flexible hinge domain-containing protein 1

A6NHR9

10

19

24

spdya-A

Speedy protein 1-A

Q9PU13

3

1

5

spo11*

Meiotic recombination protein

Q9Y5K1

5

18

3

stag1*

Cohesin subunit SA-1

Q8WVM7

18

45

36

stag2*

Cohesin subunit SA-2

Q8N3U4

18

27

19

stag3*

Cohesin subunit SA-3

O70576

19

12

24

stra8

Stimulated by retinoic acid gene 8 protein

P70278

0

0

0

syce1

Synaptonemal complex central element protein 1

Q8N0S2

1

1

1

syce2*

Synaptonemal complex central element protein 2

Q505B8

10

6

8

syce3*

Synaptonemal complex central element protein 3

B5KM66

1

2

1

sycp1

Synaptonemal complex protein 1

Q62209

0

4

6

sycp2

Synaptonemal complex protein 2

Q9CUU3

8

8

6

sycp3

Synaptonemal complex protein 3

P70281

6

15

2

terb1*

Telomere repeats-binding bouquet formation protein 1

Q8NA31

5

3

3

terb2*

Telomere repeats-binding bouquet formation protein 2

Q9D494

2

1

1

tex11*

Testis-expressed sequence 11 protein

Q8IYF3

43

53

46

TOP6BL

Type 2 DNA topoisomerase 6 subunit B-like

Q8N6T0

18

43

9

trip13

Pachytene checkpoint protein 2 homolog

Q15645

5

2

7

wWee2

Wee1-like protein kinase 2

Q66JT0

10

36

12

xrcc1

DNA repair protein XRCC1

Q60596

3

2

2

xrcc2*

DNA repair protein XRCC2

Q9CX47

9

8

21

xrcc3*

DNA repair protein XRCC3

Q08DH8

4

3

2

xrcc4

DNA repair protein XRCC4

Q924T3

27

52

23

zmcm3

Zygotic minichromosome maintenance protein 3

Q7ZXZ0

2

5

1

  1. Genes specific for meiosis are labeled with an asterisk (*)
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BMC Genomics

ISSN: 1471-2164

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