Mycoplasma genitalium: whole genome sequence analysis, recombination and population structure

BMC Genomics

Table 1 Main characteristics of the Mycoplasma genitalium sample set (n = 28)

Sample Name	Country of Origin	Year of Isolation	AZM^b	ERY^b	CIP^b	MXF^b	DOX^b	SOL^b
M2282	Denmark	1991	0.004	0.063	4	0.125	0.25	<= 0.001
M2300	Denmark	1991	0.008	0.125	16	0.125	0.25	<= 0.001
M2341	Denmark	1991	0.008	0.25	2	0.25	1	<= 0.001
M30	UK	1980	0.008	0.125	8	0.125	0.5	<= 0.001
M6090^a	France	1994	0.004	0.063	2	0.063	0.125	<= 0.001
M6151^a	France	1994	0.008	0.125	4	0.125	0.25	<= 0.001
M6257	Sweden	2004	>8	>16	1	0.25	0.5	2
M6270	Australia	2004	>8	>16	4	0.125	0.25	0.5
M6280	Sweden	1997	0.004	0.063	1	0.063	0.125	<= 0.001
M6283	Japan	2003	0.004	0.063	2	0.125	0.5	<= 0.001
M6284	Japan	2003	0.004	0.125	4	0.125	0.25	<= 0.001
M6285	Sweden	1997	0.004	0.125	1	0.125	0.5	<= 0.001
M6286	Sweden	2001	0.002	0.03	2	0.03	0.25	<= 0.001
M6303	Norway	2003	>8	>16	8	0.25	2	0.5
M6312^a	France	1994	0.004	0.063	8	0.125	0.25	<= 0.001
M6327	Denmark	2005	0.016	0.125	8	0.25	0.25	0.002
M6328	Sweden	1998	0.004	0.125	2	0.125	0.25	<= 0.001
M6475	Sweden	2006	0.008	0.125	1	0.5	0.5	<= 0.001
M6489	Sweden	2007	>16	>16	>16	>16	1	1
M6593	Norway	2008	16	>16	2	0.125	0.063	0.5
M6604	Denmark	2009	64	>16	4	0.25	0.5	2
M6711	Australia	2010	>16	> = 64	>16	8	1	0.25
M6713	Australia	2010	0.063	0.03	0.5	0.125	0.5	<= 0.001
R32G	USA	1974-1975^c	ND	ND	ND	ND	ND	ND
TW10-6G	USA	1974-1975^c	ND	ND	ND	ND	ND	ND
TW10-5G	USA	1974-1975^c	ND	ND	ND	ND	ND	ND
TW48–5G	USA	1974-1975^c	ND	ND	ND	ND	ND	ND
UTMB-10G	USA	1986^d	ND	ND	ND	ND	ND	ND

ISSN: 1471-2164