Skip to main content

Table 3 Precision, Recall and F-Score for alignments of the simulated dataset

From: seq-seq-pan: building a computational pan-genome data structure on whole genome alignment

  Precision Recall F-score
TBA 0.993 0.999 0.997
progressiveMauve 0.992 0.477 0.644
seq-seq-pan 0.993 0.475 0.643
Mugsy 0.999 0.474 0.643
Mugsy with duplications 0.999 0.474 0.643
progressiveCactus 0.892 0.473 0.618
progressiveCactus with duplications 0.999 0.339 0.506
  1. We compare the results of all alignment tools with the true alignment of the simulated genomes. Aligners are sorted first by F-score and then by Recall