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Table 4 F-score for pairwise comparison of alignment results for the M. tuberculosis dataset

From: seq-seq-pan: building a computational pan-genome data structure on whole genome alignment

  seq-seq-pan Mugsy* progressiveMauve TBA progressiveCactus
seq-seq-pan - 0.996 0.991 0.975 0.934
Mugsy* 0.996 - 0.990 0.974 0.934
progressiveMauve 0.991 0.990 - 0.972 0.928
TBA 0.975 0.974 0.972 - 0.914
progressiveCactus 0.934 0.934 0.928 0.914 -
  1. We estimate the similarity of alignments of progressiveMauve, Mugsy, progressiveCactus, seq-seq-pan and TBA, by calculating the pairwise F-score. The aligner with the most similar alignment is shown in bold for each aligner. * Aligning 43 M. tuberculosis genomes caused a segmentation fault in Mugsy. We were able to align 39 genomes and therefore compare the results only for this set of sequences