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Table 1 Significantly different variables between the transgenic lines and the wild type in the different datasets on the basis of the OnPLS multivariate analysis

From: A multi-omics approach reveals function of Secretory Carrier-Associated Membrane Proteins in wood formation of​ ​​Populus​​ ​trees

Dataset Total number of variables Number of the variables downregulated in transgenic lines compared to the wild type Number of the variables upregulated in the transgenic lines compared to the wild type
Transcriptome 27,929 2639 2951
Proteome 1208 9 95
Metabolome (LC-MS) 1141 54 317
Metabolome (GC-MS) 214 12 22
Metabolome (Py-GC/MS) 109 17 38
  1. The comparisons are done on the basis of the first component of the OnPLS analysis. |p(CORR)| > 0.5 was applied here as an arbitrary cutoff value to identify statistically significant variation between the transgenic lines and the wild type