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Table 2 The most upregulated variables in the transgenic PttSCAMP3 RNAi lines from the OnPLS analysis

From: A multi-omics approach reveals function of Secretory Carrier-Associated Membrane Proteins in wood formation of​ ​​Populus​​ ​trees

Transcript Protein Metabolite (LC-MS) Metabolite (GC-MS)
Potri.010G017600 (receptor kinase 3) −0.9 Potri.002G251600 (Actin binding Calponin homology (CH) domain-containing protein) −0.8 324.0377@0.60600036 −0.9 Glycerol 1-palmitate −0.8
Potri.008G125700 (RING-H2 finger A2A) −0.9 Potri.006G168900 (SET domain-containing protein) −0.8 Suberic acid −0.9 Erythrose −0.6
Potri.006G230700 (homeobox protein ATH1) −0.9 Potri.015G108300 −0.8 396.1603@9.253999 −0.9 Myo-inositol-1-phosphate −0.6
Potri.008G098300 −0.9 Potri.014G066800 (golgi snare 12) −0.8 Monogalactosyldiacyl-glycerol (36:6) −0.8 Gluconic acid-6-phosphate −0.5
Potri.018G093100 (homolog of X-ray repair cross complementing 3 −0.9 Potri.018G060600 −0.8 888.5163@9.920005 −0.8 Oxalic acid −0.5
Potri.011G081900 −0.9 Potri.019G053700 (isopentenyl-diphosphate delta-isomerase) −0.8 Monogalactosyldiacyl-glycerol (36:6) −0.8 Linoleic acid −0.5
Potri.018G106700 (DNAse I-like superfamily protein) −0.9 Potri.010G081600 (similar to auxin down-regulated protein ARG10) −0.8 Monogalactosyldiacyl-glycerol (36:6) −0.8 alpha-Linolenic acid −0.5
Potri.009G166100 −0.9 Potri.012G074900 (B12D protein) −0.8 Phosphatidic acid (36:6) −0.8   
Potri.015G071100 −0.9 Potri.001G309200 (BolA-like family protein) −0.8 458.0594@0.5979997 −0.8   
Potri.003G165800 −0.9 Potri.016G000400 (RAB GTPase homolog A2B) −0.8 380.1651@9.253999 −0.8   
Potri.001G058600 (Squamosa promoter-binding protein-like) −0.8 Potri.010G038400 (pyruvate dehydrogenase complex E1 α subunit) −0.8 Hydroxycaproic acid −0.8   
Potri.009G056200 (NB-ARC disease resistance protein) −0.8 Potri.006G255800 (Myosin heavy chain-related protein) −0.7 octadecadienoic acid −0.8   
Potri.002G191900 (gibberellin 2-oxidase 6) −0.8 Potri.006G107100 (aspartate aminotransferase 1) −0.7 283.0899@1.0639995 −0.8   
Potri.003G063900 (ELF4-like 4) −0.8 Potri.010G127500 (protein phosphatase 2A subunit A2) −0.7 digalactosyldiacylglycerol (34:3) −0.8   
Potri.003G100100 (Homeodomain-like protein) −0.8 Potri.007G013400 (peptidylprolyl cis/trans isomerase) −0.7 516.0613@0.6520003 −0.8   
Potri.016G110300 (Josephin family protein) −0.8 Potri.008G217700 (cullin 1) −0.7 digalactosyldiacylglycerol (34:3) −0.8   
Potri.016G026600 (alpha-L-arabinofuranosidase 1) −0.8 Potri.003G098400 (Proteasome component (PCI) domain protein) −0.7 1118.559@9.75 −0.8   
Potri.002G065900 (5-FORMYLTETRAHYDRO-FOLATE CYCLO-LIGASE-RELATED) −0.8 Potri.015G042600 (TCP-1/cpn60 chaperonin family protein) −0.7 920.3991@11.602999 −0.8   
Potri.002G024300 (SAUR-like auxin-responsive protein family) −0.8 Potri.018G091100 (Transducin/WD40 repeat-like superfamily protein) −0.7 Digalactosyldiacyl-glycerol (36:6) −0.8   
Potri.016G140200 (Leucine-rich repeat protein kinase) −0.8 Potri.007G091000(Lipase/lipooxygenase, PLAT/LH2 family protein) −0.7 934.5073@9.919004 −0.8   
Potri.014G129800 (complex 1 family protein/LVR family protein) −0.8 Potri.012G069000 (METHYL-TRANSFERASE PMT2-RELATED) −0.7 490.2831@10.1900015 −0.8   
Potri.003G111000 −0.8 Potri.016G087900 (adenylosuccinate synthase) −0.7 5′-AMP −0.8   
Potri.T128200 (Disease resistance protein family) −0.8 Potri.001G206400 (Polymerase/ histidinol phosphatase-like) −0.7 Phosphatidic acid (36:6) −0.8   
Potri.T034300 −0.8 Potri.002G105100 (Clathrin adaptor complexes medium subunit family protein) −0.7 830.4298@11.596002 −0.8   
Potri.005G148400 (AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT −0.8 Potri.T002400 (Disease resistance protein (TIR-NBS-LRR class) family) −0.7 812.4986@9.919004 −0.8   
Potri.010G194400 (Yos1-like protein) −0.8 Potri.001G021900 −0.7 737.4975@10.446007 −0.8   
Potri.017G059900 (ralf-like 32) −0.8 Potri.006G138600 (chaperonin 20) −0.7 124.0619@0.7949998 −0.8   
Potri.017G027800 (RHOMBOID-like protein 13) −0.8 Potri.014G090100 (exocyst complex component sec10) −0.7 453.9293@9.467004 −0.8   
Potri.016G073500 −0.8 Potri.004G140900 (cytochrome P450, family 707, subfamily A, polypeptide 4) −0.7 Monogalactosyldiacyl-glycerol (36:6) −0.8   
Potri.001G281600 (Lateral organ boundaries domain protein) −0.8 Potri.013G128600 (ribosomal protein L5 B) −0.7 689.1812@0.5330003 −0.8   
  1. The variables are listed in descending order of statistical significance (p(CORR) from the OnPLS analysis. The p(CORR) value is depicted next to each variable. The transcript and protein annotations are according to JGI V3.0. LC-MS metabolites without annotations could not be identified and are listed as mass@retention time. Galactolipids can be present as adduct forms. Full datasets are listed in Additional files 3,4,5 and 6