Transcriptomic analysis reveals unique molecular factors for lipid hydrolysis, secondary cell-walls and oxidative protection associated with thermotolerance in perennial grass

Xu, Yi; Huang, Bingru

doi:10.1186/s12864-018-4437-z

Table 7 GO terms in down-regulated DEGs that showed specific enrichment to A. stolonifera

From: Transcriptomic analysis reveals unique molecular factors for lipid hydrolysis, secondary cell-walls and oxidative protection associated with thermotolerance in perennial grass

GO ID	Ontology	Term	Level	ID	Annotation	Log2 FC in A. stolonifera
GO:0010132	biological_process	dhurrin biosynthetic process	10	TRINITY_DN102712_c0_g3	4-hydroxyphenylacetaldehyde oxime monooxygenase	−2.23
				TRINITY_DN101496_c0_g2	4-hydroxyphenylacetaldehyde oxime monooxygenase	−2.35
				TRINITY_DN107273_c0_g1	Cyanohydrin beta-glucosyltransferase	−2.52
GO:0006535	biological_process	cysteine biosynthetic process from serine	10	TRINITY_DN111995_c9_g3	Serine hydroxymethyltransferase 1	−1.36
GO:0006535	biological_process	cysteine biosynthetic process from serine	10	TRINITY_DN108518_c2_g18	Cysteine synthase	−1.45
GO:0006563	biological_process	L-serine metabolic process	6	TRINITY_DN112384_c6_g19	Serine hydroxymethyltransferase 1	−1.53
GO:0006563	biological_process	L-serine metabolic process	6	TRINITY_DN111995_c9_g15	Serine hydroxymethyltransferase 1	−1.55
GO:0006544	biological_process	glycine metabolic process	6	TRINITY_DN114224_c3_g11	Cysteine synthase	−1.76
GO:0006544	biological_process	glycine metabolic process	6	TRINITY_DN111631_c4_g1	Serine acetyltransferase 2	−1.79
GO:0030170	molecular_function	pyridoxal phosphate binding	2	TRINITY_DN111901_c2_g2	Serine acetyltransferase 2	−1.83
				TRINITY_DN108545_c1_g2	Cysteine synthase	−2.00
				TRINITY_DN111995_c9_g3	Serine hydroxymethyltransferase 1	−1.36
				TRINITY_DN112384_c6_g19	Serine hydroxymethyltransferase 1	−1.53
				TRINITY_DN111995_c9_g15	Serine hydroxymethyltransferase 1	−1.55
				TRINITY_DN104761_c8_g8	Glutamate--glyoxylate aminotransferase 1	−1.86
				TRINITY_DN105135_c11_g1	Glutamate--glyoxylate aminotransferase 1	−1.91
				TRINITY_DN108881_c1_g1	Aminomethyltransferase	−2.03
				TRINITY_DN89720_c3_g1	Glycine cleavage system H protein	−2.30
				TRINITY_DN88310_c1_g1	Glycine cleavage system H protein	−2.49
GO:0004345	molecular_function	glucose-6-phosphate dehydrogenase activity	1	TRINITY_DN106237_c1_g1	Glucose-6-phosphate 1-dehydrogenase 1	−1.71
GO:0006006	biological_process	glucose metabolic process	3	TRINITY_DN110605_c3_g2	Glucose-6-phosphate 1-dehydrogenase 1	−1.73
GO:0050661	molecular_function	NADP binding	2	TRINITY_DN104972_c0_g1	Phosphoglucomutase	−1.73
				TRINITY_DN117464_c1_g8	Glucose-6-phosphate 1-dehydrogenase 1	−1.74
				TRINITY_DN107111_c2_g2	Glucose-6-phosphate 1-dehydrogenase 1	−1.94
				TRINITY_DN92321_c0_g3	Glucose-6-phosphate 1-dehydrogenase 1	−1.97
				TRINITY_DN110467_c12_g1	Glyceraldehyde-3-phosphate dehydrogenase A	−2.59
				TRINITY_DN108728_c4_g8	Glyceraldehyde-3-phosphate dehydrogenase B	−2.78
				TRINITY_DN110467_c13_g13	Glyceraldehyde-3-phosphate dehydrogenase A	−2.90
				TRINITY_DN108728_c4_g45	Glyceraldehyde-3-phosphate dehydrogenase A	−3.09
GO:0006098	biological_process	pentose-phosphate shunt	11	TRINITY_DN106239_c5_g3	Photosystem II stability/assembly factor HCF136	−1.34
				TRINITY_DN104836_c5_g8	Glutamine synthetase	−1.37
				TRINITY_DN115697_c0_g2	Acetyltransferase NSI	−1.63
				TRINITY_DN103999_c8_g1	Glutamine synthetase	−1.64
				TRINITY_DN106237_c1_g1	Glucose-6-phosphate 1-dehydrogenase 1	−1.71
				TRINITY_DN110605_c3_g2	Glucose-6-phosphate 1-dehydrogenase 1	−1.73
				TRINITY_DN111792_c1_g5	Ribulose-phosphate 3-epimerase	−1.86
				TRINITY_DN107111_c2_g2	Glucose-6-phosphate 1-dehydrogenase 1	−1.94
				TRINITY_DN92321_c0_g3	Glucose-6-phosphate 1-dehydrogenase 1	−1.97
				TRINITY_DN111792_c1_g12	Ribulose-phosphate 3-epimerase	−2.01
				TRINITY_DN115720_c2_g1	Ribose-5-phosphate isomerase 3	−2.20
GO:0004601	molecular_function	peroxidase activity	2	TRINITY_DN110325_c0_g1	Uncharacterized protein At1g32220, chloroplastic	−1.11
GO:0006979	biological_process	response to oxidative stress	1	TRINITY_DN114953_c0_g1	UV-B-induced protein At3g17800, chloroplastic	−1.22
GO:0042744	biological_process	hydrogen peroxide catabolic process	3	TRINITY_DN98249_c0_g3	Thioredoxin F	−1.22
				TRINITY_DN100788_c0_g1	Glyoxylate/succinic semialdehyde reductase 1	−1.34
				TRINITY_DN115073_c1_g1	Cryptochrome-1	−1.36
				TRINITY_DN97981_c0_g1	Phospholipid hydroperoxide glutathione peroxidase 1	−1.40
				TRINITY_DN94618_c1_g1	Protein CHLOROPLAST ENHANCING STRESS TOLERANCE, chloroplastic	−1.50
				TRINITY_DN98459_c0_g1	Chromophore lyase CRL	−1.54
				TRINITY_DN95499_c1_g3	Phospholipid hydroperoxide glutathione peroxidase 1	−1.55
				TRINITY_DN101976_c5_g1	Photosynthetic NDH subunit of subcomplex B 5	−1.58
				TRINITY_DN106585_c0_g6	Thioredoxin reductase NTRC	−1.59
				TRINITY_DN102867_c2_g1	Peroxidase 50	−1.62
				TRINITY_DN114075_c0_g1	BTB/POZ and TAZ domain-containing protein 3	−1.81
				TRINITY_DN106929_c2_g1	BTB/POZ and TAZ domain-containing protein 2	−1.91
				TRINITY_DN100903_c0_g1	Thylakoid lumenal 29 kDa protein	−1.96
				TRINITY_DN100475_c0_g1	Thylakoid lumenal 29 kDa protein	−2.10
				TRINITY_DN115590_c0_g1	BTB/POZ and TAZ domain-containing protein 4	−2.16
				TRINITY_DN106093_c0_g1	Peroxidase	−2.58
				TRINITY_DN113217_c1_g1	BTB/POZ and TAZ domain-containing protein 2	−2.65
				TRINITY_DN107140_c0_g4	Thioredoxin-like 3–1	−2.84
				TRINITY_DN113511_c1_g1	Peroxidase 2	−3.76
				TRINITY_DN98542_c3_g1	Peroxidase 54	−4.02
				TRINITY_DN96923_c1_g3	Cationic peroxidase SPC4	−4.91
				TRINITY_DN95139_c0_g1	Cationic peroxidase SPC4	−6.29
				TRINITY_DN100813_c0_g3	Peroxidase 4	−6.93
				TRINITY_DN101060_c1_g1	Peroxidase 4	−9.13
GO:0008422	molecular_function	beta-glucosidase activity	1	TRINITY_DN110778_c2_g6	Glucan endo-1,3-beta-glucosidase 8	−1.64
				TRINITY_DN109548_c0_g2	Beta-glucosidase 10	−1.98
				TRINITY_DN112637_c0_g6	Glucan endo-1,3-beta-glucosidase 11	−2.79
				TRINITY_DN109199_c4_g1	Beta-glucosidase 33	−2.87
				TRINITY_DN115749_c2_g4	Beta-glucosidase 3	−3.89
				TRINITY_DN106744_c2_g2	Beta-glucosidase 10	−4.30
				TRINITY_DN106744_c2_g5	Beta-glucosidase 12	−4.45
				TRINITY_DN98601_c0_g1	Glucan endo-1,3-beta-glucosidase 13	−4.75
				TRINITY_DN107872_c3_g1	Glucan endo-1,3-beta-glucosidase 13	−6.01
				TRINITY_DN108629_c1_g9	Beta-glucosidase 3	−7.87
				TRINITY_DN113597_c1_g1	Beta-glucosidase 3	−8.22
GO:0016859	molecular_function	cis-trans isomerase activity	1	TRINITY_DN102435_c1_g1	Peptidyl-prolyl cis-trans isomerase FKBP16–3	−1.19
				TRINITY_DN96729_c0_g2	Peptidyl-prolyl cis-trans isomerase FKBP17–2	−1.65
				TRINITY_DN94270_c0_g2	Peptidyl-prolyl cis-trans isomerase FKBP18	−2.02
				TRINITY_DN97784_c1_g1	Peptidyl-prolyl cis-trans isomerase FKBP16–4	−2.02
				TRINITY_DN107032_c0_g1	Peptidyl-prolyl cis-trans isomerase CYP38	−2.13
				TRINITY_DN98688_c1_g2	Beta-carotene isomerase D27	−2.42
				TRINITY_DN105648_c0_g1	Peptidyl-prolyl cis-trans isomerase CYP37	−2.51
				TRINITY_DN100063_c0_g1	Peptidyl-prolyl cis-trans isomerase CYP26–2	−2.88
				TRINITY_DN103314_c0_g1	Peptidyl-prolyl cis-trans isomerase CYP37	−3.02
GO:0004760	molecular_function	serine-pyruvate transaminase activity	1	TRINITY_DN104761_c8_g8	Glutamate--glyoxylate aminotransferase 1	−1.86
GO:0008453	molecular_function	alanine-glyoxylate transaminase activity	1	TRINITY_DN105135_c11_g1	Glutamate--glyoxylate aminotransferase 1	−1.91
GO:0047958	molecular_function	glycine:2-oxoglutarate aminotransferase activity	1	TRINITY_DN108610_c12_g11	Serine--glyoxylate aminotransferase	−1.95
GO:0047958	molecular_function	glycine:2-oxoglutarate aminotransferase activity	1	TRINITY_DN108610_c12_g18	Serine--glyoxylate aminotransferase	−2.25
GO:0050281	molecular_function	serine-glyoxylate transaminase activity	1	TRINITY_DN108610_c12_g18	Serine--glyoxylate aminotransferase	−2.25
GO:0004781	molecular_function	sulfate adenylyltransfer-ase (ATP) activity	1	TRINITY_DN99919_c0_g1	ATP sulfurylase 4	−1.47
				TRINITY_DN111733_c0_g1	ATP sulfurylase 2	−2.58
				TRINITY_DN111633_c0_g6	ATP sulfurylase 2	−2.64
GO:0004017	molecular_function	adenylate kinase activity	2	TRINITY_DN100455_c0_g1	Adenylate kinase 2	−1.35
GO:0004017	molecular_function	adenylate kinase activity	2	TRINITY_DN103594_c0_g8	Adenylate kinase 5	−1.57
GO:0006354	biological_process	DNA-templated transcription, elongation	12	TRINITY_DN106267_c0_g4	Adenylate kinase 5	−1.68
				TRINITY_DN106135_c0_g4	Adenylate kinase 5	−1.72
				TRINITY_DN106106_c0_g1	Adenylate kinase 5	−1.87
GO:0004802	molecular_function	transketolase activity	1	TRINITY_DN117305_c5_g24	Transketolase	−1.39
				TRINITY_DN117516_c6_g24	Transketolase	−1.46
				TRINITY_DN117305_c5_g8	Transketolase	−1.81
GO:0047100	molecular_function	glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	1	TRINITY_DN110467_c12_g1	Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic	−2.59
				TRINITY_DN108728_c4_g8	Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic	−2.78
				TRINITY_DN110467_c13_g13	Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic	−2.90
				TRINITY_DN108728_c4_g45	Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic	−3.09
GO:0008891	molecular_function	glycolate oxidase activity	1	TRINITY_DN101527_c7_g10	Peroxisomal (S)-2-hydroxy-acid oxidase GLO5	−1.21
GO:0009854	biological_process	oxidative photosynthetic carbon pathway	4	TRINITY_DN101527_c7_g6	Peroxisomal (S)-2-hydroxy-acid oxidase GLO5	−1.29
GO:0010109	biological_process	regulation of photosynthesis	4	TRINITY_DN110877_c7_g22	Glycerate dehydrogenase HPR, peroxisomal	−1.63
GO:0019048	biological_process	modulation by virus of host morphology or physiology	3	TRINITY_DN103470_c9_g13	Peroxisomal (S)-2-hydroxy-acid oxidase GLO1	−1.64
GO:0052852	molecular_function	very-long-chain-(S)-2-hydroxy-acid oxidase activity	1	TRINITY_DN108661_c4_g28	Glycerate dehydrogenase HPR, peroxisomal	−1.75
GO:0052853	molecular_function	long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity	1	TRINITY_DN104606_c11_g2	Peroxisomal (S)-2-hydroxy-acid oxidase GLO1	−1.79
GO:0052854	molecular_function	medium-chain-(S)-2-hydroxy-acid oxidase activity	1	TRINITY_DN101527_c7_g4	Peroxisomal (S)-2-hydroxy-acid oxidase GLO5	−2.94
GO:0009658	biological_process	chloroplast organization	2	TRINITY_DN112733_c1_g4	Inner membrane protein PPF-1, chloroplastic	−1.08
GO:0010027	biological_process	thylakoid membrane organization	4	TRINITY_DN120021_c4_g4	Cytochrome c biogenesis protein CCS1, chloroplastic	−1.24
GO:0043623	biological_process	cellular protein complex assembly	6	TRINITY_DN103959_c1_g2	Zinc finger protein CONSTANS-LIKE 5	−1.27
				TRINITY_DN113749_c1_g2	Plastidal glycolate/glycerate translocator 1, chloroplastic	−1.33
				TRINITY_DN106239_c5_g3	Photosystem II stability/assembly factor HCF136	−1.34
				TRINITY_DN94274_c0_g1	Sec-independent protein translocase protein TATC, chloroplastic	−1.44
				TRINITY_DN94618_c1_g1	Protein CHLOROPLAST ENHANCING STRESS TOLERANCE, chloroplastic	−1.50
				TRINITY_DN100252_c1_g2	Protein THYLAKOID FORMATION1, chloroplastic	−1.53
				TRINITY_DN98459_c0_g1	Chromophore lyase CRL	−1.54
				TRINITY_DN106585_c0_g6	Thioredoxin reductase NTRC	−1.59
				TRINITY_DN106529_c0_g1	Preprotein translocase subunit SECY, chloroplastic	−1.76
GO:0034051	biological_process	negative regulation of plant-type hypersensitive response	8	TRINITY_DN82813_c0_g2	RPM1-interacting protein 4	−1.54
				TRINITY_DN104137_c0_g2	Protein LSD1	−2.48
				TRINITY_DN105439_c0_g2	Protein LSD1	−3.18
				TRINITY_DN105439_c0_g1	Protein LSD1	−3.93
GO:0034250	biological_process	positive regulation of cellular amide metabolic process	7	TRINITY_DN107506_c3_g2	Chloroplast stem-loop binding protein of 41 kDa a, chloroplastic	−1.67
GO:0045727	biological_process	positive regulation of translation	12	TRINITY_DN109357_c3_g14	Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic	−2.81
				TRINITY_DN109357_c3_g9	Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic	−2.87
				TRINITY_DN109357_c3_g19	Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic	−4.39
GO:0008266	molecular_function	poly(U) RNA binding	2	TRINITY_DN118068_c3_g9	31 kDa ribonucleoprotein, chloroplastic	−1.01
				TRINITY_DN111995_c9_g3	Serine hydroxymethyltransferase 1	−1.36
				TRINITY_DN112384_c6_g19	Serine hydroxymethyltransferase 1	−1.53
				TRINITY_DN107506_c3_g2	Chloroplast stem-loop binding protein of 41 kDa a, chloroplastic	−1.67
GO:0051287	molecular_function	NAD binding	2	TRINITY_DN104957_c4_g1	Cytosolic isocitrate dehydrogenase [NADP]	−1.02
				TRINITY_DN100788_c0_g1	Glyoxylate/succinic semialdehyde reductase 1	−1.34
				TRINITY_DN111312_c1_g3	NAD-dependent malic enzyme 1, mitochondrial	−1.42
				TRINITY_DN111312_c0_g2	NAD-dependent malic enzyme 59 kDa isoform, mitochondrial	−1.51
				TRINITY_DN110877_c7_g22	Glycerate dehydrogenase HPR, peroxisomal	−1.63
				TRINITY_DN108661_c4_g28	Glycerate dehydrogenase HPR, peroxisomal	−1.75
				TRINITY_DN110977_c0_g2	Isocitrate dehydrogenase [NADP]	−1.78
GO:0010181	molecular_function	FMN binding	4	TRINITY_DN101527_c7_g10	Peroxisomal (S)-2-hydroxy-acid oxidase GLO5	−1.21
				TRINITY_DN86676_c0_g1	NAD(P)H dehydrogenase (quinone) FQR1	−1.27
				TRINITY_DN101527_c7_g6	Peroxisomal (S)-2-hydroxy-acid oxidase GLO5	−1.29
				TRINITY_DN106478_c0_g2	Putative 12-oxophytodienoate reductase 11	−1.35
GO:0004497	molecular_function	monooxygenase activity	1	TRINITY_DN95871_c1_g1	Zeaxanthin epoxidase, chloroplastic	−1.26
				TRINITY_DN112129_c0_g3	Flavonoid 3′-monooxygenase	−1.54
				TRINITY_DN109168_c1_g3	3,9-dihydroxypterocarpan 6A–monooxygenase	−1.80
				TRINITY_DN95695_c0_g5	Premnaspirodiene oxygenase	−1.96
				TRINITY_DN102712_c0_g3	4-hydroxyphenylacetaldehyde oxime monooxygenase	−2.23
				TRINITY_DN117628_c13_g163	Ribulose bisphosphate carboxylase small chain PW9, chloroplastic	−2.31
				TRINITY_DN108893_c0_g1	Cytochrome P450 711A1	−2.34
				TRINITY_DN101496_c0_g2	4-hydroxyphenylacetaldehyde oxime monooxygenase	−2.35
				TRINITY_DN117628_c13_g182	Ribulose bisphosphate carboxylase small chain PWS4.3, chloroplastic	−2.77
				TRINITY_DN111951_c3_g11	Ribulose bisphosphate carboxylase small chain PWS4.3, chloroplastic	−2.94
				TRINITY_DN117628_c13_g29	Ribulose bisphosphate carboxylase small chain PW9, chloroplastic	−3.12
				TRINITY_DN117628_c13_g288	Ribulose bisphosphate carboxylase small chain PWS4.3, chloroplastic	−3.32
				TRINITY_DN112168_c0_g2	Cytochrome P450 709B2	−3.35
				TRINITY_DN102506_c1_g1	Flavin-containing monooxygenase FMO GS-OX-like 5	−3.45
				TRINITY_DN117628_c13_g145	Ribulose bisphosphate carboxylase small chain PWS4.3, chloroplastic	−3.65
				TRINITY_DN117628_c13_g315	Ribulose bisphosphate carboxylase small chain, chloroplastic	−3.96

The transcriptional regulations under heat stress, log2 fold change (log2 FC), in these GO terms are also listed

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ISSN: 1471-2164

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