Table 3 Virulence factors and antimicrobial resistance of A. ruhlandii SCCH3:Ach33–1365 and B. cenocepacia GIMC4560:Bcn122
From: On Burkholderiales order microorganisms and cystic fibrosis in Russia
The component | A. ruhlandii SCCH3:Ach33–1365 | B. cenocepacia GIMC4560:Bcn122 chr1 | B. cenocepacia GIMC4560:Bcn122 chr2 | B. cenocepacia GIMC4560:Bcn122 chr3 | B. cenocepacia GIMC4560:Bcn122 chr1–3 |
|---|---|---|---|---|---|
The number | |||||
Antimicrobial agents resistance | |||||
beta-lactamases | 10 | 4 | 8 | 1 | 13 |
class A | 2 | 0 | 2 | 0 | 2 |
class B | 3 | 3 | 1 | 0 | 4 |
class C | 4 | 1 | 4 | 1 | 6 |
class D | 1 | 0 | 1 | 0 | 1 |
aminoglycoside phosphotransferase | 0 | 3 | 0 | 0 | 3 |
aminoglycoside acetyltransferase | 2 | 0 | 0 | 0 | 0 |
macrolide glycosyltransferase | 0 | 1 | 0 | 0 | 1 |
number of RND pumps | 13 | 8 | 9 | 5 | 22 |
number of complete RND pumps | 10 | 5 | 5 | 3 | 13 |
number of incomplete RND pumps | 3 | 3 | 4 | 2 | 9 |
acriflavine/ heavy metal resistance RND pumps | 5 | 3 | 2 | 1 | 6 |
drug resistance RND pumps | 3 | 1 | 1 | 2 | 4 |
RND pumps with unknown function | 2 | 1 | 2 | 0 | 3 |
Mobility, adhesion, invasion | |||||
Flp pili (type VIb) proteins | 18 | 14 | 0 | 0 | 14 |
IVа type pili proteins | 0 | 4 | 0 | 0 | 4 |
flagella proteins | 57 | 52 | 0 | 0 | 52 |
capsule proteins | 10 | 14 | 0 | 0 | 14 |
Type III secretion system | |||||
type III secretion system injectisome complex proteins | 32 | 0 | 23 | 0 | 23 |
search for secreted type-III proteins (EffectiveT3) | 570 | 314 | 321 | 98 | 733 |
sorted by Psortb and TMHMM | 224 | 135 | 157 | 52 | 344 |
with coiled-coil domain | 81 | 47 | 30 | 11 | 88 |
with MxxY motif | 9 | 6 | 5 | 2 | 13 |