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Table 2 List of differentially expressed miRNAs between Low and High groups, based on genomic estimated breeding values (GEBV) for intramuscular fat, identified by miRDeep2 and the number of target genes obtained by IPA® for each miRNA

From: Integrative analysis of microRNAs and mRNAs revealed regulation of composition and metabolism in Nelore cattle

miRNA

FDR1

Fold Change2

Low GEBV3

High GEBV3

Target Genes4

bta-let-7f

0.04

−1.67

2617.43

3767.18

1236

bta-let-7a-5p

0.08

−1.45

1526.04

1908.20

1236

bta-miR-146b

0.08

1.55

423.46

301.78

544

bta-miR-100

0.09

1.71

1968.02

840.72

176

bta-miR-143

0.09

1.30

32,275.17

27,539.78

648

bta-miR-423-5p

0.09

−1.60

311.91

488.05

294

  1. 1False discovery rate adjusted p-values by Benjamini-Hochberg methodology
  2. 2Log2 Fold Change from low to high groups
  3. 3Mean normalized counts from low and high groups
  4. 4Target genes identified by IPA
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BMC Genomics

ISSN: 1471-2164

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