Mouse chromocenters DNA content: sequencing and in silico analysis

BMC Genomics

Table 2 Repeats fragment found in assembled contigs

Family	Subfamily	Fragments	Length
Endogenous Retrovirus
	ERV	7	3384
	ERV1	6	3300
	ERV2	20	8745
	ERV3	10	7107
Non-LTR Retrotransposon
	L1	2	681
	SINE2/tRNA	1	194
Pseudogene
	rDNA	4	3587
Total		50	26,998

Endogenous retroviruses are the most abundant family of transposable elements in assembled contigs. Column names means: fragments – the amount of contigs’ fragments with similarity to the subfamily indicated; length – total fragments’ length of the subfamily indicated

ISSN: 1471-2164