Table 5 Percentage of ChrmC reads mapped to ERV internal sequences and LTRs with Bowtie2 tool
From: Mouse chromocenters DNA content: sequencing and in silico analysis
ERV internal part | ERV LTR | ||||||
|---|---|---|---|---|---|---|---|
Repbase name | Read mapped % | Class | Repbase name | Read mapped% | Class | ||
1 | IAPEz-int | 1.148 | ERV2 | 1 | MTA_Mm | 0.274 | ERV3 |
2 | MERV3-int | 0.238 | ERV3 | 2 | MTD | 0.260 | ERV3 |
3 | MTA_Mm-int | 0.164 | ERV3 | 3 | MT2B | 0.241 | ERV3 |
4 | IAPEY3-int | 0.163 | ERV2 | 4 | MTC | 0.223 | ERV3 |
5 | RLTR6-int | 0.131 | ERV2 | 5 | RLTR12B | 0.221 | ERV2 |
6 | ORR1B1-int | 0.122 | ERV3 | 6 | RLTR20A4 | 0.201 | ERV2 |
7 | MMERVK10C-int | 0.119 | ERV2 | 7 | RLTR9D | 0.176 | ERV2 |
8 | RLTR10-int | 0.153 | ERV3 | 8 | RMER20A | 0.141 | ERV2 |
9 | MTD-int | 0.108 | ERV2 | 9 | MTEb | 0.114 | ERV3 |
10 | ORR1D1-int | 0.093 | ERV2 | 10 | MTB | 0.110 | ERV3 |