Skip to main content

Table 9 Top 10 genes in 4 dpd embryos with greatest transcript abundance changes relative to normoxic diapause II embryos

From: The genome of Austrofundulus limnaeus offers insights into extreme vertebrate stress tolerance and embryonic development

 

Gene symbol

Gene type

Description

P-valuea

ΔFPKMb

Up

LOC106528963

protein coding

hemoglobin embryonic subunit alpha

3.15E-38

4755

 

LOC106528894

protein coding

hemoglobin subunit beta-like

4.10E-28

2717

 

LOC106523751

ncRNA

uncharacterized

3.32E-26

2492

 

LOC106512448

pseudo

fatty acid-binding protein, brain pseudogene

1.96E-08

2045

 

LOC106525147

protein coding

hemoglobin subunit alpha-1-like

5.69E-45

1539

 

LOC106522944

protein coding

fatty acid-binding protein, brain

1.31E-15

1483

 

LOC106528904

protein coding

hemoglobin embryonic subunit alpha-like

1.01E-25

1370

 

Pseudo16S

pseudo

Mitochondrially encoded 16S rRNA pseudogene

9.28E-05

1281

 

LOC106525143

protein coding

hemoglobin subunit beta-like

8.06E-41

1079

 

LOC106511047

protein coding

prothymosin alpha-B-like

9.16E-48

1062

Down

LOC106535866

protein coding

heat shock cognate 70 kDa protein

2.28E-16

−14,958

 

LOC106517545

protein coding

lipocalin-like

1.35E-25

−10,327

 

LOC106513764

ncRNA

uncharacterized

6.84E-06

−10,299

 

ahsg

protein coding

alpha 2-HS glycoprotein

4.25E-11

− 6618

 

LOC106524240

protein coding

galactose-specific lectin nattectin-like

1.47E-05

− 5070

 

ccng1

protein coding

cyclin G1

6.56E-25

− 4354

 

LOC106529138

protein coding

elongation factor 1-alpha-like

2.18E-04

− 4141

 

LOC106518780

protein coding

keratin, type I cytoskeletal 19-like

1.06E-19

− 4062

 

LOC106526789

protein coding

ferritin, middle subunit

3.16E-11

− 4003

 

ubb

protein coding

ubiquitin B

8.06E-03

− 3830

  1. aFDR adjusted P-value
  2. bChange in mean FPKM values of DII embryos in anoxia relative to DII t = 0
  3. FPKM, Fragments per kilobase of transcript per million mapped reads