Table 6 Performance of AltHap on simulated biallelic triploid data set with haplotype block length m=1000, data error rate p e =0.002, and different read lengths
From: Sparse Tensor Decomposition for Haplotype Assembly of Diploids and Polyploids
Read length | Cov | CPR | MEC | t(s) |
|---|---|---|---|---|
2 × 250 | 10 | 98.2 | 322 | 30.74 |
2 × 250 | 20 | 95.1 | 1986 | 59.65 |
2 × 250 | 30 | 98.4 | 2412 | 109.73 |
2 × 300 | 10 | 93.0 | 856 | 34.83 |
2 × 300 | 20 | 97.9 | 1410 | 66.50 |
2 × 300 | 30 | 97.7 | 3216 | 117.62 |
2 × 500 | 10 | 95.5 | 682 | 39.36 |
2 × 500 | 20 | 92.4 | 2605 | 66.37 |
2 × 500 | 30 | 93.0 | 5869 | 116.69 |