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Table 1 The MtN3/Saliva/SWEETs gene family in Brassica rapa and information relevant to Arabidopsis thaliana

From: Genome-wide identification, phylogeny, evolution, and expression patterns of MtN3/saliva/SWEET genes and functional analysis of BcNS in Brassica rapa

Group

Arabidopsis thaliana

Brassica rapa

 

Gene name

Accession number

ORF(bp)

Deduced polypeptide

Gene name

Accession number

Chromosome

Subgenome

ORF(bp)

Deduced polypeptide

Number of domain

Protein length (aa)

MW(kD)

PI

Protein length (aa)

MW(kD)

PI

I

AtSWEET1

AT1G21460

744

247

27.268

9.2

BrSWEET1a

Bra016421

8

MF1

756

251

27.818

9.27

2

       

BrSWEET1b

Bra017916

6

LF

741

246

27.185

9.3

2

 

AtSWEET2

AT3G14770

711

236

26.467

8.5

BrSWEET2a

Bra021577

1

MF1

711

236

26.567

7.59

2

       

BrSWEET2b

Bra027314

5

LF

648

215

24.078

9.16

2

       

BrSWEET2c

Bra027312

5

LF

387

128

14.299

9.15

1

 

AtSWEET3

AT5G53190

792

263

29.537

9.3

BrSWEET3a

Bra022636

2

MF2

780

259

29.328

8.71

2

       

BrSWEET3b

Bra003075

10

LF

579

192

21.593

7.64

1

II

AtSWEET4

AT3G28007

756

251

27.815

8.7

BrSWEET4a

Bra025317

6

LF

747

248

27.488

9.07

2

       

BrSWEET4b

Bra033034

2

MF1

738

245

27.416

8.94

2

 

AtSWEET5

AT5G62850

723

240

27.21

8.9

BrSWEET5a

Bra035879

9

MF2

723

240

27.3

9.04

2

       

BrSWEET5b

Bra029245

2

MF1

723

240

26.971

8.15

2

       

BrSWEET5c

Bra029244

2

MF1

723

240

26.826

8.14

2

 

AtSWEET6

AT1G66770

786

261

28.867

9.3

/

/

/

/

/

/

/

/

/

 

AtSWEET7

AT4G10850

777

258

28.531

9.2

BrSWEET7a

Bra035270

9

LF

750

249

27.362

9.62

2

       

BrSWEET7b

Bra000725

3

MF1

537

178

19.581

8.63

1

 

AtSWEET8

AT5G40260

720

239

26.886

9.3

BrSWEET8

Bra025595

4

LF

717

238

26.793

8.97

2

III

AtSWEET9

AT2G39060

777

258

28.716

9.2

BrSWEET9

Bra000116

3

MF2

813

270

30.125

9.18

2

 

AtSWEET10

AT5G50790

870

289

32.763

9.3

BrSWEET10

Bra022761

3

MF1

870

290

33.041

9.29

2

 

AtSWEET11

AT3G48740

870

289

31.921

9.3

BrSWEET11a

Bra018039

6

LF

870

289

32.068

9.18

2

       

BrSWEET11b

Bra019560

6

MF2

858

285

31.584

9.32

2

       

BrSWEET11c

Bra029914

1

MF1

873

290

32.343

9.04

2

 

AtSWEET12

AT5G23660

858

285

31.487

9.1

BrSWEET12a

Bra009700

6

LF

867

288

31.781

9.07

2

       

BrSWEET12b

Bra026487

9

MF2

834

277

30.494

9.13

2

 

AtSWEET13

AT5G50800

885

294

32.504

9.4

BrSWEET13

Bra040489

scanfold

/

885

294

32.747

9.05

2

 

AtSWEET14

AT4G25010

846

281

30.969

9.0

BrSWEET14a

Bra013854

1

LF

822

273

30.105

9.29

2

       

BrSWEET14b

Bra010477

8

MF2

819

272

29.916

9.18

2

       

BrSWEET14c

Bra019197

3

MF1

717

238

26.408

9.08

2

 

AtSWEET15

AT5G13170

879

292

32.936

8.2

BrSWEET15a

Bra023394

2

MF2

894

297

33.156

8.26

2

       

BrSWEET15b

Bra006185

3

MF1

951

316

35.814

8.86

2

       

BrSWEET15c

Bra008850

10

LF

630

209

23.314

7.74

2

       

BrSWEET18

Bra012412

7

MF2

528

175

20.093

9.38

2

IV

AtSWEET16

AT3G16690

693

230

25.744

5.1

BrSWEET16a

Bra001638

3

MF2

696

231

25.679

9.06

2

       

BrSWEET16b

Bra021190

1

MF1

696

231

25.754

8.69

2

 

AtSWEET17

AT4G15920

726

241

26.813

6.1

BrSWEET17a

Bra012752

3

MF1

723

240

26.444

8.76

2

       

BrSWEET17b

Bra038060

8

MF2

735

244

27.311

9.01

2

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BMC Genomics

ISSN: 1471-2164

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