From: Improving eukaryotic genome annotation using single molecule mRNA sequencing
Statistic | Original A. ceylanicum genome annotation (AC-Orig) | Improved A. ceylanicum genome annotation using PacBio data (AC-PB) | AC-Orig genes overlapping (10%) AC-PB genes with PacBio evidence | AC-PB genes with PacBio evidence (with or without EST evidence) |
---|---|---|---|---|
Number of genes | 16,026 | 17,540 | 6734 | 8238 |
Number of single exon genes | 805 | 863 | 154 | 211 |
Total length of all exons (bp) | 15,590,301 | 17,519,546 | 7,915,169 | 9,931,507 |
Total number of exons | 117,877 | 121,578 | 63,273 | 67,714 |
Average exon length (bp) | 132.3 | 144.1 | 125.1 | 146.7 |
Average # exons/gene | 7.4 | 6.9 | 9.4 | 8.2 |
Total length of all CDS exons (bp) | 15,429,981 | 15,685,322 | 28,877,304 | 27,490,435 |
Total number of CDS exons | 117,657 | 119,866 | 63,129 | 66,083 |
Average CDS exon length (bp) | 131.1 | 130.9 | 123.5 | 123.2 |
Average # coding exons/gene | 7.3 | 6.8 | 9.4 | 8.0 |
Total length of all introns (bp) | 63,133,642 | 60,868,345 | 28,930,431 | 28,142,643 |
Total number of introns | 101,851 | 104,038 | 56,566 | 59,476 |
Average intron length (bp) | 621.2 | 594.9 | 511.7 | 473.2 |
Average # introns/gene | 6.4 | 5.9 | 8.4 | 7.2 |
Total UTR length (bp) | 160,320 | 1,834,224 | 117,930 | 1,788,957 |
Number of genes with UTR | 1889 | 7295 | 1205 | 6567 |
Average size of UTR per gene with UTR | 84.9 | 251.4 | 97.9 | 272.4 |
Number of genes with UTR < 10 bp | 1228 | 3966 | 744 | 3451 |
Number of genes with UTR 10Â bp - 100Â bp | 423 | 1058 | 287 | 908 |
Number of genes with UTR > 100 bp | 238 | 2271 | 174 | 2208 |
Total 5’ UTR length (bp) | 63,556 | 300,333 | 39,954 | 273,401 |
Number of genes with 5’ UTR | 1150 | 3488 | 710 | 3013 |
Number of genes with spliced 5’ UTR | 127 | 745 | 82 | 696 |
Total 3’ UTR length (bp) | 96,764 | 1533,891 | 77,976 | 1515,556 |
Number of genes with 3’ UTR | 1238 | 6611 | 817 | 6145 |
Number of genes with spliced 3’ UTR | 45 | 400 | 33 | 388 |
# of ESTs at 3’ | – | – | 3610 | 105,053 |
polyA signal ‘aataaa/attaaa’ | – | – | 1307 | 61,069 |
polyA signal ‘agtaaa’ only | – | – | 215 | 7775 |
polyA total (any signal) | – | – | 1522 | 68,844 |