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Fig. 5 | BMC Genomics

Fig. 5

From: Identification of novel MITEs (miniature inverted-repeat transposable elements) in Coxiella burnetii: implications for protein and small RNA evolution

Fig. 5

CbsR16 loci have full-size and small versions. a MUSCLE sequence alignment of discontiguous megaBLAST hits that returned full-size versions of the CbsR16 locus. Conserved bases appear as gray blocks, while unaligned bases appear as green, yellow, blue, and red bands, corresponding to T, G, C, and A bases, respectively. An identity indictor is shown above the sequence alignment, where the height signifies conservation of bases at that position, with a color indicator for overall identity between aligned ranges (green: 100%, yellow: 20-99%, red: 0-19%). Above this identity indicator is the consensus sequence, appearing as colored bands indicating bases as described above. b As in (A), except the MUSCLE alignment displays the top discontiguous megaBLAST hits (> 75% of input sequence) associated with the CbsR16 locus, excluding all full-size hits. An asterisk indicates equivalent positions in the full-size and small versions of QMITE2

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BMC Genomics

ISSN: 1471-2164

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