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Table 2 Summary of genome assembly and annotation in isolate S15

From: Intraspecific comparative genomics of isolates of the Norway spruce pathogen (Heterobasidion parviporum) and identification of its potential virulence factors

Feature

Value

Scaffold numbera

287

Total scaffold length (Mb)a

37.76

Scaffold N50 (Kb)

630.6

Scaffold N90 (Kb)

89.4

Maximum scaffold length (Mb)

3.49

Minimum scaffold length (Kb)

4.1

GC content (%)a

53.00

Number of predicted genesa

10,502

Number of genes with RNA-seq supportb

8859

Mean protein length (aa)

479

Total gene length (Mb)

22.35

Number of genes with Blast hits

9789

Number of genes with InterProScan hits

7941

Number of genes with GO annotations

6977

Benchmarking Universal Single-Copy Orthologs (BUSCOs) assessmentc

C: 92.6% (1332), D: 11% (158), F: 6.2% (89), M: 1.2% (17)

  1. aThe corresponding genome information of H. irregulare TC32–1 were 15 scaffolds, 33.6 Mb, GC content of 52.23% and 13,405 genes predicted
  2. bBased on alignment with constructed transcripts by Trinity v2.3.2 (E-value <1e-5)
  3. cC: complete (including complete single copy and duplicated BUSCOs), D: duplicated, F: fragmented, M: missing