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Table 3 ChIP-seq on transcription factors and genome assemblies used to compare TrawlerWeb, RSAT peak-motifs and MEME-ChIP

From: TrawlerWeb: an online de novo motif discovery tool for next-generation sequencing datasets

Transcription factor ChIP-seq GEO accession number Reference for ChIP-seq ChIP-seq dataset size (kbp) Reference for known binding site Species Genome
Zic3.2 GSM1017643 Winata et al., 2013 [49] 282 JASPAR PB0207.1 D. rerio danRer7
TOC1 GSM878068 Huang et al., 2012 [47] 343 Huang et al., 2012 A. thaliana TAIR9
MEF2A GSM1377538 Houles et al., 2015 [46] 338 JASPAR MA0052.3 M. musculus mm9
Su(H) GSE66225 Skalska et al., 2015 [48] 475 JASPAR MA0085.1 D. melano-gaster dm3
Sox15.1 GSM1536045 Sulahian et al., 2015 [40] 1783 JASPAR PB0065.1 H. sapiens hg19