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Table 1 General genomic characteristics of cocci-shaped Sporosarcina strains

From: Comparative genomics of cocci-shaped Sporosarcina strains with diverse spatial isolation

Accession ID Strain Location Isolated Sequencing platform Coverage Contigs Base pairs (bp) %GC CDS tRNAs Plasmid(s) Prophage(s)a Insertion Sequences
PDZF00000000 Sporosarcina sp. P7 USA: Woodland Hills, CA Illumina 4457 38 3,169,294 41.4 3071 55 0 0 (6) 10
PDZE00000000 Sporosarcina sp. P3a USA: Reseda, CA Illumina 443 34 3,379,590 41.5 3238 50 0 0 (2) 11
PDZD00000000 Sporosarcina sp. P35 USA: Honolulu, HI Illumina 614 75 3,252,669 44.5 3247 59 1 2 (1) 16
PDZC00000000 Sporosarcina sp. P34 USA: Waikiki, HI Illumina 544 23 3,262,144 41.4 3203 44 0 1 (1) 8
PDZB00000000 Sporosarcina sp. P32b Japan Illumina 506 70 3,314,266 41.3 3218 58 0 0 (2) 15
PDZA00000000 Sporosarcina sp. P31 Japan Illumina 479 70 3,316,673 41.3 3218 57 0 0 (2) 17
PDYZ00000000 Sporosarcina sp. P30 Japan Illumina 482 72 3,313,921 41.3 3215 58 0 0 (2) 15
PDYY00000000 Sporosarcina sp. P2a USA: Canoga Park, CA Illumina 573 33 3,328,642 41.3 3235 52 0 0 (1) 12
PDYX00000000 Sporosarcina sp. P29 Japan: Yokahama Illumina 531 160 3,382,122 41.4 3325 58 0 0 (2) 19
PDYW00000000 Sporosarcina sp. P26b Japan: Tokyo Illumina 501 66 3,382,782 41.2 3246 50 0 0 (2) 11
PDYV00000000 Sporosarcina sp. P25 Japan: Tokyo Illumina 572 45 3,269,093 41.1 3182 51 0 0 (3) 13
PDYU00000000 Sporosarcina sp. P21c USA: Berkeley, CA Illumina 442 50 3,384,350 42.2 3292 54 0 1 (0) 13
PDYT00000000 Sporosarcina sp. P20a USA: Berkeley, CA Illumina 515 58 3,314,917 41.4 3228 56 0 0 (1) 12
PDYS00000000 Sporosarcina sp. P1a USA: Canoga Park, CA Illumina 866 48 3,306,654 41.2 3194 50 0 0 (2) 13
PDYR00000000 Sporosarcina sp. P19 USA: Berkeley, CA Illumina 504 34 3,339,001 41.4 3216 50 0 0 (3) 5
PDYQ00000000 Sporosarcina sp. P18a USA: Berkeley, CA Illumina 559 18 3,219,274 41.4 3149 51 0 1 (1) 4
PDYP00000000 Sporosarcina sp. P17b USA: Berkeley, CA Illumina 529 52 3,401,750 41.3 3336 60 0 1 (5) 11
PDYO00000000 Sporosarcina sp. P16b USA: Berkeley, CA Illumina 475 44 3,363,873 41.1 3281 51 0 0 (1) 19
PDYN00000000 Sporosarcina sp. P16a USA: Berkeley, CA Illumina 427 46 3,293,369 41.1 3185 56 0 0 (3) 12
PDYM00000000 Sporosarcina sp. P13 USA: San Diego, CA Illumina 800 85 3,318,423 40.6 3234 54 0 1 (2) 16
PDYL00000000 Sporosarcina sp. P12 USA: San Diego, CA Illumina 539 42 3,438,859 41.4 3372 56 0 0 (1) 16
PDYK00000000 Sporosarcina sp. P10 USA: San Diego, CA Illumina 510 43 3,437,370 41.4 3374 47 0 0 (1) 15
CP015108 Sporosarcina ureae str. S204 South Africa: Pretoria Pacific Biosciences 174 1 3,362,333 41.5 3196 60 0 0 (1) 46
CP015027 Sporosarcina sp. P33 Japan: Tokyo Pacific Biosciences 158 1 3235,441 44.5 3050 68 0 1 (1) 29
CP015109 Sporosarcina sp. P17a USA: Berkeley, CA Pacific Biosciences 183 1 3,412,428 41.5 3204 68 0 0 (2) 15
CP015207 Sporosarcina sp. P8 USA: Los Angeles, CA Pacific Biosciences 707 1 3,353,765 41.2 3164 69 0 0 (3) 12
CP015348 Sporosarcina sp. P32a Japan Pacific Biosciences 169 1 3,382,744 41.4 3183 68 0 0 (4) 28
CP015349 Sporosarcina sp. P37 USA: Boston, MA Pacific Biosciences 150 1 3,271,521 44.7 3155 68 1 2 (1) 37
NZ_AUDQ00000000 Sporosarcina ureae str. DSM 2281 unknown (Type Strain) Illumina unknown 36 3,318,232 41.4 3241 56 0 0 (2) 2
  1. aNumbers outside parentheses are complete prophages, while number within are total number of prophages