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Table 1 General genomic characteristics of cocci-shaped Sporosarcina strains

From: Comparative genomics of cocci-shaped Sporosarcina strains with diverse spatial isolation

Accession ID

Strain

Location Isolated

Sequencing platform

Coverage

Contigs

Base pairs (bp)

%GC

CDS

tRNAs

Plasmid(s)

Prophage(s)a

Insertion Sequences

PDZF00000000

Sporosarcina sp. P7

USA: Woodland Hills, CA

Illumina

4457

38

3,169,294

41.4

3071

55

0

0 (6)

10

PDZE00000000

Sporosarcina sp. P3a

USA: Reseda, CA

Illumina

443

34

3,379,590

41.5

3238

50

0

0 (2)

11

PDZD00000000

Sporosarcina sp. P35

USA: Honolulu, HI

Illumina

614

75

3,252,669

44.5

3247

59

1

2 (1)

16

PDZC00000000

Sporosarcina sp. P34

USA: Waikiki, HI

Illumina

544

23

3,262,144

41.4

3203

44

0

1 (1)

8

PDZB00000000

Sporosarcina sp. P32b

Japan

Illumina

506

70

3,314,266

41.3

3218

58

0

0 (2)

15

PDZA00000000

Sporosarcina sp. P31

Japan

Illumina

479

70

3,316,673

41.3

3218

57

0

0 (2)

17

PDYZ00000000

Sporosarcina sp. P30

Japan

Illumina

482

72

3,313,921

41.3

3215

58

0

0 (2)

15

PDYY00000000

Sporosarcina sp. P2a

USA: Canoga Park, CA

Illumina

573

33

3,328,642

41.3

3235

52

0

0 (1)

12

PDYX00000000

Sporosarcina sp. P29

Japan: Yokahama

Illumina

531

160

3,382,122

41.4

3325

58

0

0 (2)

19

PDYW00000000

Sporosarcina sp. P26b

Japan: Tokyo

Illumina

501

66

3,382,782

41.2

3246

50

0

0 (2)

11

PDYV00000000

Sporosarcina sp. P25

Japan: Tokyo

Illumina

572

45

3,269,093

41.1

3182

51

0

0 (3)

13

PDYU00000000

Sporosarcina sp. P21c

USA: Berkeley, CA

Illumina

442

50

3,384,350

42.2

3292

54

0

1 (0)

13

PDYT00000000

Sporosarcina sp. P20a

USA: Berkeley, CA

Illumina

515

58

3,314,917

41.4

3228

56

0

0 (1)

12

PDYS00000000

Sporosarcina sp. P1a

USA: Canoga Park, CA

Illumina

866

48

3,306,654

41.2

3194

50

0

0 (2)

13

PDYR00000000

Sporosarcina sp. P19

USA: Berkeley, CA

Illumina

504

34

3,339,001

41.4

3216

50

0

0 (3)

5

PDYQ00000000

Sporosarcina sp. P18a

USA: Berkeley, CA

Illumina

559

18

3,219,274

41.4

3149

51

0

1 (1)

4

PDYP00000000

Sporosarcina sp. P17b

USA: Berkeley, CA

Illumina

529

52

3,401,750

41.3

3336

60

0

1 (5)

11

PDYO00000000

Sporosarcina sp. P16b

USA: Berkeley, CA

Illumina

475

44

3,363,873

41.1

3281

51

0

0 (1)

19

PDYN00000000

Sporosarcina sp. P16a

USA: Berkeley, CA

Illumina

427

46

3,293,369

41.1

3185

56

0

0 (3)

12

PDYM00000000

Sporosarcina sp. P13

USA: San Diego, CA

Illumina

800

85

3,318,423

40.6

3234

54

0

1 (2)

16

PDYL00000000

Sporosarcina sp. P12

USA: San Diego, CA

Illumina

539

42

3,438,859

41.4

3372

56

0

0 (1)

16

PDYK00000000

Sporosarcina sp. P10

USA: San Diego, CA

Illumina

510

43

3,437,370

41.4

3374

47

0

0 (1)

15

CP015108

Sporosarcina ureae str. S204

South Africa: Pretoria

Pacific Biosciences

174

1

3,362,333

41.5

3196

60

0

0 (1)

46

CP015027

Sporosarcina sp. P33

Japan: Tokyo

Pacific Biosciences

158

1

3235,441

44.5

3050

68

0

1 (1)

29

CP015109

Sporosarcina sp. P17a

USA: Berkeley, CA

Pacific Biosciences

183

1

3,412,428

41.5

3204

68

0

0 (2)

15

CP015207

Sporosarcina sp. P8

USA: Los Angeles, CA

Pacific Biosciences

707

1

3,353,765

41.2

3164

69

0

0 (3)

12

CP015348

Sporosarcina sp. P32a

Japan

Pacific Biosciences

169

1

3,382,744

41.4

3183

68

0

0 (4)

28

CP015349

Sporosarcina sp. P37

USA: Boston, MA

Pacific Biosciences

150

1

3,271,521

44.7

3155

68

1

2 (1)

37

NZ_AUDQ00000000

Sporosarcina ureae str. DSM 2281

unknown (Type Strain)

Illumina

unknown

36

3,318,232

41.4

3241

56

0

0 (2)

2

  1. aNumbers outside parentheses are complete prophages, while number within are total number of prophages