From: Comparative genomics of cocci-shaped Sporosarcina strains with diverse spatial isolation
Accession ID | Strain | Location Isolated | Sequencing platform | Coverage | Contigs | Base pairs (bp) | %GC | CDS | tRNAs | Plasmid(s) | Prophage(s)a | Insertion Sequences |
---|---|---|---|---|---|---|---|---|---|---|---|---|
PDZF00000000 | Sporosarcina sp. P7 | USA: Woodland Hills, CA | Illumina | 4457 | 38 | 3,169,294 | 41.4 | 3071 | 55 | 0 | 0 (6) | 10 |
PDZE00000000 | Sporosarcina sp. P3a | USA: Reseda, CA | Illumina | 443 | 34 | 3,379,590 | 41.5 | 3238 | 50 | 0 | 0 (2) | 11 |
PDZD00000000 | Sporosarcina sp. P35 | USA: Honolulu, HI | Illumina | 614 | 75 | 3,252,669 | 44.5 | 3247 | 59 | 1 | 2 (1) | 16 |
PDZC00000000 | Sporosarcina sp. P34 | USA: Waikiki, HI | Illumina | 544 | 23 | 3,262,144 | 41.4 | 3203 | 44 | 0 | 1 (1) | 8 |
PDZB00000000 | Sporosarcina sp. P32b | Japan | Illumina | 506 | 70 | 3,314,266 | 41.3 | 3218 | 58 | 0 | 0 (2) | 15 |
PDZA00000000 | Sporosarcina sp. P31 | Japan | Illumina | 479 | 70 | 3,316,673 | 41.3 | 3218 | 57 | 0 | 0 (2) | 17 |
PDYZ00000000 | Sporosarcina sp. P30 | Japan | Illumina | 482 | 72 | 3,313,921 | 41.3 | 3215 | 58 | 0 | 0 (2) | 15 |
PDYY00000000 | Sporosarcina sp. P2a | USA: Canoga Park, CA | Illumina | 573 | 33 | 3,328,642 | 41.3 | 3235 | 52 | 0 | 0 (1) | 12 |
PDYX00000000 | Sporosarcina sp. P29 | Japan: Yokahama | Illumina | 531 | 160 | 3,382,122 | 41.4 | 3325 | 58 | 0 | 0 (2) | 19 |
PDYW00000000 | Sporosarcina sp. P26b | Japan: Tokyo | Illumina | 501 | 66 | 3,382,782 | 41.2 | 3246 | 50 | 0 | 0 (2) | 11 |
PDYV00000000 | Sporosarcina sp. P25 | Japan: Tokyo | Illumina | 572 | 45 | 3,269,093 | 41.1 | 3182 | 51 | 0 | 0 (3) | 13 |
PDYU00000000 | Sporosarcina sp. P21c | USA: Berkeley, CA | Illumina | 442 | 50 | 3,384,350 | 42.2 | 3292 | 54 | 0 | 1 (0) | 13 |
PDYT00000000 | Sporosarcina sp. P20a | USA: Berkeley, CA | Illumina | 515 | 58 | 3,314,917 | 41.4 | 3228 | 56 | 0 | 0 (1) | 12 |
PDYS00000000 | Sporosarcina sp. P1a | USA: Canoga Park, CA | Illumina | 866 | 48 | 3,306,654 | 41.2 | 3194 | 50 | 0 | 0 (2) | 13 |
PDYR00000000 | Sporosarcina sp. P19 | USA: Berkeley, CA | Illumina | 504 | 34 | 3,339,001 | 41.4 | 3216 | 50 | 0 | 0 (3) | 5 |
PDYQ00000000 | Sporosarcina sp. P18a | USA: Berkeley, CA | Illumina | 559 | 18 | 3,219,274 | 41.4 | 3149 | 51 | 0 | 1 (1) | 4 |
PDYP00000000 | Sporosarcina sp. P17b | USA: Berkeley, CA | Illumina | 529 | 52 | 3,401,750 | 41.3 | 3336 | 60 | 0 | 1 (5) | 11 |
PDYO00000000 | Sporosarcina sp. P16b | USA: Berkeley, CA | Illumina | 475 | 44 | 3,363,873 | 41.1 | 3281 | 51 | 0 | 0 (1) | 19 |
PDYN00000000 | Sporosarcina sp. P16a | USA: Berkeley, CA | Illumina | 427 | 46 | 3,293,369 | 41.1 | 3185 | 56 | 0 | 0 (3) | 12 |
PDYM00000000 | Sporosarcina sp. P13 | USA: San Diego, CA | Illumina | 800 | 85 | 3,318,423 | 40.6 | 3234 | 54 | 0 | 1 (2) | 16 |
PDYL00000000 | Sporosarcina sp. P12 | USA: San Diego, CA | Illumina | 539 | 42 | 3,438,859 | 41.4 | 3372 | 56 | 0 | 0 (1) | 16 |
PDYK00000000 | Sporosarcina sp. P10 | USA: San Diego, CA | Illumina | 510 | 43 | 3,437,370 | 41.4 | 3374 | 47 | 0 | 0 (1) | 15 |
CP015108 | Sporosarcina ureae str. S204 | South Africa: Pretoria | Pacific Biosciences | 174 | 1 | 3,362,333 | 41.5 | 3196 | 60 | 0 | 0 (1) | 46 |
CP015027 | Sporosarcina sp. P33 | Japan: Tokyo | Pacific Biosciences | 158 | 1 | 3235,441 | 44.5 | 3050 | 68 | 0 | 1 (1) | 29 |
CP015109 | Sporosarcina sp. P17a | USA: Berkeley, CA | Pacific Biosciences | 183 | 1 | 3,412,428 | 41.5 | 3204 | 68 | 0 | 0 (2) | 15 |
CP015207 | Sporosarcina sp. P8 | USA: Los Angeles, CA | Pacific Biosciences | 707 | 1 | 3,353,765 | 41.2 | 3164 | 69 | 0 | 0 (3) | 12 |
CP015348 | Sporosarcina sp. P32a | Japan | Pacific Biosciences | 169 | 1 | 3,382,744 | 41.4 | 3183 | 68 | 0 | 0 (4) | 28 |
CP015349 | Sporosarcina sp. P37 | USA: Boston, MA | Pacific Biosciences | 150 | 1 | 3,271,521 | 44.7 | 3155 | 68 | 1 | 2 (1) | 37 |
NZ_AUDQ00000000 | Sporosarcina ureae str. DSM 2281 | unknown (Type Strain) | Illumina | unknown | 36 | 3,318,232 | 41.4 | 3241 | 56 | 0 | 0 (2) | 2 |