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Table 1 Analyses of clean reads in the chicken hypothalamus

From: Comparative transcriptome analysis of hypothalamus-regulated feed intake induced by exogenous visfatin in chicks

Sample name Raw reads Clean reads Mapping rate Uniquely mapped rate Exon% Intron% Intergenic% GC content % Average RPKM
C1 63,306,944 61,717,348 82.01% 81.11% 60.3 6.6 33.1 49.10 21.17
C2 60,243,690 58,704,022 82.29% 81.43% 60.6 7.1 32.3 48.43 20.97
C3 62,219,776 60,616,596 82.35% 81.45% 61.1 7.1 31.8 48.58 20.79
HT1 68,168,766 66,327,478 82.3% 81.41% 60.5 7.7 31.8 48.34 21.07
HT2 61,505,548 59,694,092 82.29% 81.4% 60.8 7.6 31.6 48.50 21.16
HT3 57,359,412 55,863,346 82.46% 81.58% 61.3 7.2 31.5 48.69 21.28
LT1 60,860,822 59,147,790 81.87% 80.99% 62.2 7.5 30.2 48.88 20.94
LT2 59,589,616 57,924,762 82.99% 82.12% 63.3 6.3 30.4 48.44 21.24
LT3 61,706,770 60,178,970 82.93% 82.06% 63.7 6.8 29.5 48.51 21.28