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Table 4 Differential upregulation of peroxidase and laccase genes ≥ two-fold in stem sections of B. napus DH12075 (DH) and YN01–429 (YN)

From: Transcriptome profiling of Brassica napus stem sections in relation to differences in lignin content

Probe name DH4: YN4 DH1:YN1 DH4:DH1 YN4:YN1 Corresponding Arabidopsis loci Description
Peroxidase genes
 BN24392 2.23     AT1G05260 RARE COLD INDUCIBLE GENE 3
 BN18476   2.04    AT1G09500 similar to Eucalyptus gunnii alcohol dehydrogenase
 BN10302   4.25    AT1G12840 ARABIDOPSIS THALIANA VACUOLAR ATP SYNTHASE SUBUNIT C
 BN21410   3.73    AT1G15950 CINNAMOYL COA REDUCTASE 1
 BN14306 2.16   2.54   AT1G20620 CATALASE 3
 BN18084 6.60   2.27   AT1G20630 CATALASE 1
 BN16003 2.56     AT1G44970 Peroxidase, putative
 BN27576    2.14   AT1G48130 ARABIDOPSIS THALIANA 1-CYSTEINE PEROXIREDOXIN 1
 BN11140     2.02 AT1G71695 Peroxidase 12
 BN23842   2.50    AT1G80820 CINNAMOYL COA REDUCTASE
 BN25563   2.41    AT2G02400 Cinnamoyl-CoA reductase family
 BN13322 2.48     AT2G25080 GLUTATHIONE PEROXIDASE 1
 BN11700 2.0     AT2G30860 GLUTATHIONE S-TRANSFERASE PHI 9
 BN19562 3.68     AT2G38380 Peroxidase 22 (PER22)
 BN15586   3.54    AT2G40890 CYP98A3, encodes coumarate 3-hydroxylase (C3H)
 BN24228    2.77   AT3G03670 Peroxidase, putative
 BN13555 2.09     AT3G11630 Encodes a 2-Cys peroxiredoxin (2-Cys PrxA)
 BN14781
 82,83,84
  4.72    AT3G17390 S-ADENOSYLMETHIONINE SYNTHETASE 3
 BN19400 7.76     AT3G49110 PEROXIDASE 33
 BN16513 4.57   2.62 2.02 AT4G21960 PEROXIDASE PRXR1
 BN24317     2.03 AT4G26010 Peroxidase, putative
 BN23955    2.67   AT4G30170 Peroxidase, putative
 BN27325
 BN13535
4.35   2.17 2.17 AT4G35000 ASCORBATE PEROXIDASE 3
 BN16234 4.13     AT4G36430 Peroxidase, putative
 BN22581 3.69     AT4G37530 Peroxidase, putative
 BN14948 3.30     AT5G06290 2-CYSTEINE PEROXIREDOXIN B
 BN19087   2.29    AT5G48930 HYDROXYCINNAMOYL-COA SHIKIMATE/QUINATE HYDROXYCINNAMOYL TRANSFERASE
 BN13706   5.01    AT5G54160 O-METHYLTRANSFERASE 1
Laccase genes
 BN23268    2.17   AT2G38080 LACCASE-LIKE MULTICOPPER OXIDASE 4
 BN14150 3.23     AT5G60020 LACCASE 17