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Table 3 List of QTL detected for the ultimate pH of pectoralis major (PM-pHu) and sartorius (SART-pHu) muscles

From: Identification of genomic regions and candidate genes for chicken meat ultimate pH by combined detection of selection signatures and QTL

Name chr marker Positiona Trait BF Statisticsb Corresponding selection signatures
PM-1a 1 GGaluGA008928 24,859,232 PM-pHu 25,8 (3,5) hapFLK-1c
SART-1a 1 Gga_rs13840996 25,657,556 SART-pHu 22,6 (7,2) hapFLK-1c
SART-1a 1 Gga_rs14801623 25,685,185 SART-pHu 39,8 (8,0) hapFLK-1c
PM-1a 1 Gga_rs15214395 25,810,165 PM-pHu 47,6 (23,4) hapFLK-1c
SART-1a 1 Gga_rs13841091 25,825,380 SART-pHu 26,6 (7,1) hapFLK-1c
SART-1a 1 Gga_rs14801760 25,851,776 SART-pHu 25,1 (7,0) hapFLK-1c
PM-1a 1 Gga_rs14802541 26,664,752 PM-pHu 36,6 (6,3) hapFLK-1c
PM-1a 1 Gga_rs13842050 26,895,425 PM-pHu 300,2 (23,7) hapFLK-1c
PM-1b 1 GGaluGA012178 35,189,134 PM-pHu 33,6 (5,0)
PM-1c 1 GGaluGA027506 80,195,898 PM-pHu 24,4 (33,7) hapFLK-1e
SART-1b 1 Gga_rs13583913 82,528,289 SART-pHu 41,5 (15,5) hapFLK-1e
SART-1c 1 GGaluGA031114 88,589,870 SART-pHu 22,3 (20,2)
SART-1c 1 Gga_rs14856430 88,742,249 SART-pHu 50,3 (24,4)
SART-1d 1 Gga_rs13920866 109,502,008 SART-pHu 30,2 (20,2)
PM-2a 2 Gga_rs14135370 8,052,991 PM-pHu 107,0 (27,7) hapFLK-2a
PM-2a 2 Gga_rs14135839 8,512,020 PM-pHu 25,2 (18,4) hapFLK-2a
PM-2a 2 GGaluGA132849 8,557,078 PM-pHu 44,9 (16,6) hapFLK-2a
PM-2b 2 Gga_rs13709509 66,672,738 PM-pHu 20,4 (18,2)
PM-2c 2 Gga_rs15126247 88,786,601 PM-pHu 90,5 (25,8)
PM-2d 2 Gga_rs16102256 110,593,876 PM-pHu 65,0 (34,8)
SART-3a 3 Gga_rs14408993 105,711,393 SART-pHu 28,7 (12,6)
SART-4a 4 Gga_rs16349591 1,914,424 SART-pHu 257,2 (211,7)
SART-4a 4 GGaluGA241837 1,935,633 SART-pHu 134,7 (93,0)
SART-4a 4 Gga_rs14419109 1,985,419 SART-pHu 30,5 (36,7)
SART-4b 4 Gga_rs16407811 50,234,136 SART-pHu 23,4 (19,8)
SART-4b 4 Gga_rs14467373 50,260,314 SART-pHu 23,2 (19,3)
SART-4c 4 Gga_rs14480120 62,306,853 SART-pHu 24,1 (14,7)
PM-4a 4 GGaluGA270819 90,110,928 PM-pHu 25,8 (5,8)
PM-5a 5 GGaluGA274824 10,559,934 PM-pHu 21,2 (4,4) hapFLK-5a
PM-6a 6 Gga_rs13567905 16,876,982 PM-pHu 25,1 (9,9)
PM-6b 6 Gga_rs16552220 20,899,730 PM-pHu 24,5 (6,0)
PM-7a 7 GGaluGA308703 2,828,621 PM-pHu 34,6 (12,2)
PM-7b 7 Gga_rs15860854 22,215,517 PM-pHu 22,0 (3,4)
PM-8a 8 Gga_rs16631815 15,186,655 PM-pHu 21,5 (4,6)
PM-8b 8 Gga_rs13681628 20,157,176 PM-pHu 24,1 (8,3) FLK-8a
PM-10a 10 Gga_rs14941507 967,702 PM-pHu 58,3 (18,0)
PM-10a 10 Gga_rs14001087 986,341 PM-pHu 20,5 (8,8)
PM-12a 12 Gga_rs14031079 1,528,565 PM-pHu 22,0 (8,0)
PM-12b 12 GGaluGA083170 5,811,993 PM-pHu 67,4 (7,6)
PM-12b 12 Gga_rs14035691 5,820,013 PM-pHu 88,1 (14,4)
PM-12c 12 Gga_rs14049172 19,145,586 PM-pHu 26,5 (24,8) hapFLK-12b
PM-14a 14 Gga_rs14071447 3,274,074 PM-pHu 31,3 (8,2) hapFLK-14a
PM-14a 14 GGaluGA100179 3,387,115 PM-pHu 80,9 (16,6) hapFLK-14a
PM-16a 16 Gga_rs15026791 85,688 PM-pHu 34,6 (5,6)
SART-20a 20 Gga_rs13633029 6,881,983 SART-pHu 41,2 (34,3)
SART-20a 20 Gga_rs16167169 6,912,028 SART-pHu 35,6 (30,5)
PM-20a 20 Gga_rs15174825 7,499,329 PM-pHu 24,0 (6,1)
SART-21a 21 GGaluGA185204 5,971,877 SART-pHu 23,1 (21,6)
PM-21a 21 Gga_rs14285841 6,045,175 PM-pHu 34,3 (14,4)
PM-24a 24 Gga_rs13725186 6,092,691 PM-pHu 28,3 (24,4)
PM-24a 24 Gga_rs16199693 6,153,126 PM-pHu 110,5 (24,4)
  1. aPositions are indicated on galgal5 assembly
  2. bBF statistics obtained with a line effect fitted in the model are put in brackets
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