Skip to main content

Table 1 Twenty-eight genomic regions displayed regulatory activity in peripheral nerve relevant cells

From: A genome-wide assessment of conserved SNP alleles reveals a panel of regulatory SNPs relevant to the peripheral nerve

Region Fold-increase
Forwarda
Fold-increase
Reversea
Coordinates (hg18) rs Number
SC21-10 5.91 (M)
8.10 (C)
0.25 (M)
0.33 (C)
chr21:21,313,182-21,313,188 rs7277262
SC21-12 9.95 (M) 5.34 (M) chr21:22,535,874-22,535,880 rs2827297
SC21-13 11.42 (S) 1.04 (S) chr21:27,318,695-27,318,702 rs233616
SC21-16 28.67 (S)
30.17 (C)
2.73 (S)
3.56 (C)
chr21:29,424,534-29,424,540 rs2832203
SC21-18 1.37 (C) 8.90 (C) chr21:33,139,128-33,139,135 rs2833975
SC21-20 5.81 (S) 5.04 (S) chr21:33,273,214-33,273,219 rs2834040
SC21-27 16.05 (C) 4.71 (C) chr21:36,269,198-36,269,214 rs2835196
SC21-33 13.85 (C) 3.40 (C) chr21:38,940,551-38,940,556 rs16996658
SC21-34 6.22 (C) 0.33 (C) chr21:38,958,107-38,958,118 rs8130434
SC22-1 2.58 (M)
2.17 (C)
6.68 (M)
6.35 (C)
chr22:16,689,437-16,689,442 rs5992119
SC22-8 1.00 (M)
1.05 (C)
5.73 (M)
7.53 (C)
chr22:25,678,449-25,678,472 rs5761863
SC22-14 4.70 (C) 13.83 (C) chr22:26,146,779-26,146,784 rs733164
SCX-3 0.20 (S)
3.34 (M)
3.21 (C)
6.97 (S)
13.56 (M)
10.79 (C)
chrX:15,529,186-15,529,192 rs4646115
SCX-4 0.17 (S)
0.67 (M)
0.86 (C)
6.85 (S)
9.25 (M)
8.31 (C)
chrX:17,730,099-17,730,104 rs2187846
SCX-18 14.59 (C) 0.98 (C) chrX:31,252,044-31,252,049 rs7884417
SCX-20 7.39 (C) 1.59 (C) chrX:31,435,143-31,435,149 rs3788892
SCX-21 8.63 (S)
25.00 (M)
6.60 (C)
0.18 (S)
0.84 (M)
0.75 (C)
chrX:31,764,702-31,764,707 rs1379871
SCX-33 0.67 (C) 13.92 (C) chrX:85,443,058-85,443,064 rs6623642
SCX-39 5.84 (S) 0.50 (S) chrX:86,429,198-86,429,205 rs16980794
SCX-45 0.37 (M)
0.31 (C)
10.62 (M)
5.49 (C)
chrX:92,656,893-92,656,900 rs12687113
SCX-52 0.50 (C) 5.02 (C) chrX:99,454,087-99,454,093 rs7064056
SCX-58 6.33 (S)
13.83 (M)
14.69 (C)
0.64 (S)
0.93 (M)
1.56 (C)
chrX:121,682,472-121,682,478 rs17273301
SCX-60 0.43 (S)
0.41 (M)
0.50 (C)
5.73 (S)
21.81 (M)
8.86 (C)
chrX:123,382,405-123,382,410 rs2076164
SCX-63 21.68 (M)
12.81 (C)
1.04 (M)
0.42 (C)
chrX:125,247,437-125,247,470 rs16998722
SCX-65 15.05 (S) 0.41 (S) chrX:125,925,884-125,925,893 rs5930055
SCX-67 8.97 (S)
0.56 (C)
6.90 (S)
8.91 (C)
chrX:127,229,700-127,229,720 rs17266605
SCX-78 5.21 (S) 5.80 (S) chrX:146,960,885-146,960,891 rs6525876
SCX-81 1.09 (S) 12.85 (S) chrX:147,430,625-147,430,635 rs17252118
  1. aActivity only shown for cell line(s) where region was active
  2. S = S16, M = MN1, C = C2C12