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Table 3 Per-species gene change breakdown

From: OMGene: mutual improvement of gene models through optimisation of evolutionary conservation

  Species No. changed genes Nucleotides added/removed (means per change) In original annotation as alternative “non-primary” gene model
+ (mean) + (mean) + (mean)
Plants A. thaliana 175 1749 (43) −23,747 (−118) −22,139 (−92) 53 (30.3%)
B. rapa 97 1787 (58) −25,740 (−250) − 23,953 (− 179) 4 (4.1%)
C. papaya 540 23,820 (65) −72,053 (− 128) −48,233 (−52) 0 (0.0%)
C. rubella 298 6568 (71) −55,005 (− 170) − 48,437 (−117) 2 (0.7%)
T. cacao 556 3700 (45) −120,984 (−118) −117,284 (− 124) 95 (17.1%)
TOTAL 1666 37,624 (61) − 297,529 (−145) − 259,905 (−97) 154 (9.2%)
A. thaliana de novo 598 13,623 (42) −167,038 (−35) −51,177 (−57) N/A
Mammals C. lupus 698 8993 (64) −98,467 (−117) −89,474 (−91) 375 (53.7%)
H. sapiens 397 4429 (59) −41,401 (−101) −36,972 (−76) 218 (54.9%)
M. domestica 787 8637 (53) −100,256 (−101) −91,619 (−80) 349 (44.3%)
M. musculus 270 9685 (120) −19,236 (−79) − 9551 (−29) 81 (30.0%)
O. cuniculus 534 12,038 (61) −72,398 (− 112) −60,360 (−71) 243 (45.5%)
TOTAL 2686 43,782 (67) −331,758 (− 106) −287,976 (−76) 1266 (47.1%)
H. sapiens de novo 2907 251,344 (79) − 952,864 (−167) − 701,520 (−79) N/A
Fungi E. gossypii 46 0 (0) − 4338 (−93) −4338 (−93) N/A
D. hansenii 13 0 (0) − 2080 (−149) −2080 (−149) N/A
K. lactis 11 0 (0) − 1314 (− 110) −1314 (−110) N/A
S. cerevisiae 11 93 (93) − 2483 (− 191) − 2390 (−170) N/A
Y. lipolytica 23 117 (29) − 4186 (− 199) − 4069 (− 163) N/A
TOTAL 104 210 (42) −14,401 (− 135) − 14,191 (−127) N/A
S. cerevisiae de novo 19 601 (120) − 5561 (− 347) − 4960 (−236) N/A