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Table 2 Summary of isolates with chromosomal aberrations

From: Characterization of phenotypic variation and genome aberrations observed among Phytophthora ramorum isolates from diverse hosts

CCNV category a Isolate b colony phenotype Source c
1× CCNV Pr-140.9 (wt, QUPS) wt CA 2016
1× CCNV HK WSU111–0001 (wt, stream) wt WA 2017
1× CCNV complex HK Pr-140.7 (nwt, QUPS) nwt CA 2016
1× CCNV HK Pr-1556#7#1 (nwt, bay→QUCH→race tube) nwt CA 2016
1× CCNV HK WSU115–0118 (nwt, Rhododendron) nwt WA 2017
3× CCNV + 1× CCNV Complex HK BS2014–584 (nwt, tanoak canker) nwt CA 2017
2× cnLOH MK516a (nwt, QUAG) nwt CA 2016
2× cnLOH WSU107–0019 (nwt, Rhododendron) nwt WA 2017
2× cnLOH Pr-455 (nwt, Osmorhiza) nwt CA 2017
2× cnLOH complex HK WSU107–0072 (nwt, Rhododendron) nwt WA 2017
3× CCNV Pr-745#3 (nwt, bay→QUCH) nwt CA 2016
3× CCNV Pr-218 (wt, Rhamnus) wt CA 2017
3× CCNV Pr-102 (nwt, QUAG) nwt CA 2016
3× CCNV + 1× CCNV HK Pr-745#4 (nwt, bay→QUCH) nwt CA 2016
3× CCNV + 2× cnLOH Pr-16 (nwt, QUAG) nwt CA 2016
3× CCNV HK BS96 (nwt, bay) nwt CA 2017
3× CCNV HK Pr-472 (Corylus) nwt CA 2017
3× CCNV HK Pr-486 (Camellia) nwt CA 2017
3× CCNV HK 9D1 (wt, bay→QUAG log) wt CA 2017
sCNV euploid WSU108–0021 (wt, Viburnum) wt WA 2017
sCNV euploid WSU107–0057 (wt, Rhododendron) wt WA 2017
  1. a Due to CNV and allele ratio analyses, chromosomal aberrations were categorized into five groups: 1× CCNV, monosomy; 3× CCNV, trisomy; cnLOH, copy-number neutral loss of heterozygosity, and short CNV (sCNV) euploid. HK indicates heterokaryotic isolate
  2. b In the parentheses, colony phenotypes and host plants are indicated. Arrows such as bay→QUCH indicates the isolate was originally from California bay, inoculated and recovered from canyon live oak (see Kasuga et al., [12])
  3. Species names are: bay (California bay, Umbellularia californica); QUAG (coast live oak, Q. agrifolia); QUEN (Engelmann oak, Q. engelmannii); QUWI (interior live oak, Q. wislizeni); QUCH (canyon live oak, Q. chrysolepis); QUPS (Shreve oak, Q. parvula var. shrevei)
  4. c CA 2016 indicates California isolates, published in Kasuga et al., [12]. CA 2017 and WA 2017 indicate California and Washington State isolates, respectively, determined in this study