Table 1 The sample site, number of mapped reads (# of mapped reads), number of SNPs calculated by PoPoolation (# of SNPs), and genetic diversity indices (Tajima’s π and Watterson’s θ W ) are shown for the limpet, S. granularis and the urchin, P. angulosus. The number (#) and percentage (%) of private SNPs are also shown per population for both study species
From: Complex signatures of genomic variation of two non-model marine species in a homogeneous environment
North to south orientation | Sample site | # of mapped reads | # of SNPs | Tajima’s π | Watterson’s θ W | # of private SNPs | % of SNPs that are private |
|---|---|---|---|---|---|---|---|
S. granularis | |||||||
North | PN | 3,372,943 | 49,455 | 0.009 | 0.010 | 15,496 | 0.313 |
| HB | 4,263,248 | 113,678 | 0.011 | 0.012 | 36,035 | 0.317 |
BB | 4,756,683 | 151,071 | 0.011 | 0.012 | 54,657 | 0.362 | |
LB | 3,674,168 | 91,767 | 0.010 | 0.011 | 18,957 | 0.207 | |
JB | 4,613,158 | 152,423 | 0.012 | 0.013 | 72,096 | 0.472 | |
South | SP | 4,348,563 | 135,499 | 0.011 | 0.012 | 57,630 | 0.425 |
P. angulosus | |||||||
North | PN | 3,309,914 | 100,849 | 0.011 | 0.012 | 62,007 | 0.615 |
| HB | 2,304,239 | 18,682 | 0.006 | 0.007 | 6961 | 0.373 |
BB | 3,234,311 | 72,024 | 0.009 | 0.010 | 18,735 | 0.260 | |
LB | 3,133,465 | 69,921 | 0.009 | 0.010 | 25,390 | 0.363 | |
JB | 4,436,171 | 98,110 | 0.009 | 0.011 | 34,826 | 0.355 | |
South | SP | 2,423,381 | 24,747 | 0.007 | 0.008 | 8905 | 0.360 |
