BMC Genomics

Table 1 CNVRs extracted from penile cancer data set using the statistical model with p-value ≤ 0.05

From: CoNVaQ: a web tool for copy number variation-based association studies

						HPV-pos.	HPV-neg.
Chr	Start	End	Type	P-value	Q-value	freq. (%)	freq. (%)
4	9729740	24650257	Loss	0.0341	0.0955	21.4	0-3.7
2	230554659	234415376	Loss	0.0387	0.3650	28.6-35.7	0
17	15537019	18617236	Loss	0.0341	0.4632	21.4	0-3.7
2	204245506	207036312	Loss	0.0341	0.5235	21.4	0-3.7
2	237307835	238724893	Loss	0.0387	0.6505	28.6-35.7	0-3.7
9	33911175	34589574	Gain	0.0387	0.6977	28.6	3.7
4	40058630	40957235	Loss	0.0341	0.6977	21.4	0
17	19272468	20059509	Loss	0.0341	0.7198	21.4	0
17	7496965	8209436	Loss	0.0341	0.7295	21.4	3.7
8	37606006	38160563	Gain	0.0341	0.7325	21.4	0
19	51889824	52236621	Gain	0.0341	0.7465	21.4	0
16	779112	798699	Gain	0.0387	0.7907	28.6	3.7
5	130994540	131251586	Loss	0.0341	0.8083	21.4	0
2	218474389	218676793	Loss	0.0341	0.8163	21.4	0
3	53066401	53145339	Loss	0.0350	0.8387	35.7	0
2	240601010	240608450	Loss	0.0387	0.8415	28.6	3.7

Regions are sorted by q-value. The two rightmost columns contain the frequency of variations of the type corresponding to the type of event (column 4) for the case and control groups, respectively

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