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Table 1 CNVRs extracted from penile cancer data set using the statistical model with p-value ≤ 0.05

From: CoNVaQ: a web tool for copy number variation-based association studies

       HPV-pos. HPV-neg.
Chr Start End Type P-value Q-value freq. (%) freq. (%)
4 9729740 24650257 Loss 0.0341 0.0955 21.4 0-3.7
2 230554659 234415376 Loss 0.0387 0.3650 28.6-35.7 0
17 15537019 18617236 Loss 0.0341 0.4632 21.4 0-3.7
2 204245506 207036312 Loss 0.0341 0.5235 21.4 0-3.7
2 237307835 238724893 Loss 0.0387 0.6505 28.6-35.7 0-3.7
9 33911175 34589574 Gain 0.0387 0.6977 28.6 3.7
4 40058630 40957235 Loss 0.0341 0.6977 21.4 0
17 19272468 20059509 Loss 0.0341 0.7198 21.4 0
17 7496965 8209436 Loss 0.0341 0.7295 21.4 3.7
8 37606006 38160563 Gain 0.0341 0.7325 21.4 0
19 51889824 52236621 Gain 0.0341 0.7465 21.4 0
16 779112 798699 Gain 0.0387 0.7907 28.6 3.7
5 130994540 131251586 Loss 0.0341 0.8083 21.4 0
2 218474389 218676793 Loss 0.0341 0.8163 21.4 0
3 53066401 53145339 Loss 0.0350 0.8387 35.7 0
2 240601010 240608450 Loss 0.0387 0.8415 28.6 3.7
  1. Regions are sorted by q-value. The two rightmost columns contain the frequency of variations of the type corresponding to the type of event (column 4) for the case and control groups, respectively