Integrated miRNA-mRNA analysis reveals regulatory pathways underlying the curly fleece trait in Chinese tan sheep

Liu, Yufang; Zhang, Jibin; Xu, Qiao; Kang, Xiaolong; Wang, Kejun; Wu, Keliang; Fang, Meiying

doi:10.1186/s12864-018-4736-4

BMC Genomics

Table 4 List of miRNA-mRNA pairs and their expressions in lambs and adults

From: Integrated miRNA-mRNA analysis reveals regulatory pathways underlying the curly fleece trait in Chinese tan sheep

miRNAs			Target Genes
Name	Sequence	Fold Change (Lamb vs. Adult)	Name	Expression in SSH
novel_138	UGGAUAACGCGUCUGACU	3.2613	MYH10	L > A
novel_138	UGGAUAACGCGUCUGACU	3.2613	STXBP2	L < A
oar-miR-433-3p	AUCAUGAUGGGCUCCUCGGUGU	1.2821	STXBP2	L < A
oar-miR-433-3p	AUCAUGAUGGGCUCCUCGGUGU	1.2821	TCHH	L > A
oar-miR-541-5p	AAAGGAUUCUGCUGUCGGUCCCACU	2.1341	MYH10	L > A
oar-miR-541-5p	AAAGGAUUCUGCUGUCGGUCCCACU	2.1341	TCHH	L > A
oar-miR-1185-5p	AGAGGAUACCCUUUGUAUGUUC	2.5882	SLC25A20	L > A
oar-miR-150	UCUCCCAACCCUUGUACCAGUG	−2.2216	KRT14	L < A
oar-miR-3959-3p	UGUAUGUCAACUGAUCCACAGU	2.0561	TBRG4	L < A
oar-miR-376b-3p	AUCAUAGAGGAAAAUCCAUGU	1.819	TBRG4	L < A
oar-miR-495-5p	AGAAGUCGCCCAUGUUCUUUUCG	1.7341	STXBP2	L < A
oar-miR-487a-3p	AUCAUACAGGGACAUCCAGUUU	1.6256	SLC25A20	L > A
oar-miR-376e-5p	GGUGGAUAUUCCUUCUAUGUUU	1.4007	MYH10	L > A
oar-miR-376e-5p	GGUGGAUAUUCCUUCUAUGUUU	1.4007	TBRG4	L < A
oar-miR-432	UCUUGGAGUAGGUCAUUGGGUGG	1.31	KRT14	L < A
oar-miR-432	UCUUGGAGUAGGUCAUUGGGUGG	1.3112	TCHH	L > A
oar-miR-432	UCUUGGAGUAGGUCAUUGGGUGG	1.3112	KRT83	L > A
oar-miR-432	UCUUGGAGUAGGUCAUUGGGUGG	1.3112	STXBP2	L < A
oar-miR-106a	AAAAGUGCUUACAGUGCAGGU	1.0772	SLC25A20	L > A
oar-miR-539-3p	AAUCAUACAAGGACAAUUUCUUU	1.0261	SLC25A20	L > A
oar-miR-29a	UAGCACCAUCUGAAAUCGGUU	−2.6593	COL3A1	L < A
oar-miR-29a	UAGCACCAUCUGAAAUCGGUU	−2.6593	KRT14	L < A
oar-miR-29a	UAGCACCAUCUGAAAUCGGUU	−2.6593	TBRG4	L < A
oar-miR-148a	UCAGUGCACUACAGAACUUUGU	−1.7737	KRT14	L < A
oar-miR-148a	UCAGUGCACUACAGAACUUUGU	−1.7737	LYPD3	L < A
oar-miR-29b	UAGCACCAUUUGAAAUCAGUGU	−1.7632	COL3A1	L < A
oar-miR-29b	UAGCACCAUUUGAAAUCAGUGU	−1.7632	KRT14	L < A
oar-miR-29b	UAGCACCAUUUGAAAUCAGUGU	−1.7632	TBRG4	L < A
oar-miR-200c	UAAUACUGCCGGGUAAUGAUGG	−1.3461	STXBP2	L < A
oar-let-7a	UGAGGUAGUAGGUUGUAUAGUU	−1.2617	COL3A1	L < A
oar-let-7b	UGAGGUAGUAGGUUGUGUGGU	−1.1796	COL3A1	L < A
oar-let-7c	UGAGGUAGUAGGUUGUAUGGUU	−1.0598	COL3A1	L < A
oar-miR-218a	UUGUGCUUGAUCUAACCAUGU	−1.1696	STXBP2	L < A
oar-miR-133	UUGGUCCCCUUCAACCAGCUGU	−1.1537	STXBP2	L < A
oar-miR-125b	UCCCUGAGACCCUAACUUGUG	−1.4684	KRT71	L > A
oar-miR-191	CAACGGAAUCCCAAAAGCAGCU	−1.0191	TBRG4	L < A

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ISSN: 1471-2164

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