Fig. 5

A recent TE burst in Bgh. a Orthogroup relationships of Leotiomycete genomes. Leotiomycete genomes with available annotations in the NCBI database were assayed for their relatedness to the Bgh genome using OrthoFinder [82]. Percentage of shared orthogroups is color-coded according to the key above (abbreviations of the species used can be found in Additional file 1: Table S13). b Multi-locus phylogeny for 16 Leotiomycetes generated from 2639 single copy orthologous genes identified with OrthoFinder [82] and drawn with FigTree (http://tree.bio.ed.ac.uk/software/figtree/). The repeat content, type and the portion it represents in each species’s genome is depicted in pie charts at the tip of each branch. The scale bar indicates the number of amino-acid substitutions per site. c Repeat landscapes for each genome of the tree shown in (b). Plots for B. graminis f.sp. tritici (BGT) and E. necator (ERYN) can be found in Additional file 10: Figure S9. The sequence length occupied in the genome is depicted on the y-axis (not normalized among the species examined), while the percent divergence from the corresponding consensus sequence is given on the x-axis