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Table 1 Complete list of genomic regions and genes harboring significant SNPs identified by unbiased FST method

From: A genome-wide scan for signatures of selection in Azeri and Khuzestani buffalo breeds

Chr Location on Cattle genome Genes QTL QTL-ID QTL Reference
2 65,990,337 GPR39- ACTR3-(bta-mir-2904-3)-(bta-mir-2887-2) fatty acid content 20,506 [66]
2 112,415,910 SGPP2- MOGAT1- ACSL3- KCNE4
3 57,251,956 SNORA62 Residual feed intake 5336 [67]
3 115,361,435 SH3BP4-AGAP1
4 26,787,114 HDAC9 Somatic cell count 1500 [68]
Milk protein percentage 2517 [69]
7 55,541,968 NDFIP1 – ARHGAP26 Average Daily Gain 22,812 [13]
9 55,434,304 Rump angle 1686 [70]
Somatic cell count 1744 [71]
10 23,054,360 Teat placement 4634 [72]
Udder attachment 4633 [72]
Subcutaneous fat 7093 [73]
Meat percentage 7094 [73]
Somatic cell count 2701 [74]
Carcass weight 4546 [75]
Body weight (mature) 10,872 [76]
Marbling score (EBV) 10,874 [76]
19 23,416,189 RPH3AL-DOC2B-WDR81-SERPINF2-SERPINIF1-RPA1-DPH1-OVCA2-HIC1-SRR-SGSM2 Somatic cell score 6225 [77]
21 60,437,376 ERICH1-SERPINA3–6 Shear force 20,814 [14]
23 25,276,633 TMEM14A-FBXO9-(BOLA-DQB)
(HLA-DQB1)-(BOLA-DRB3)-BTNL2
Milk protein yield 3631 [78]
27 274,465 CLN8-ARHGEF10-KBTBD11-MYOM2
X 98,016,499 MAGED2-APEX2-RRAGB-FOXR2