A genome-wide scan for signatures of selection in Azeri and Khuzestani buffalo breeds

BMC Genomics

Table 1 Complete list of genomic regions and genes harboring significant SNPs identified by unbiased F_ST method

Chr	Location on Cattle genome	Genes	QTL	QTL-ID	QTL Reference
2	65,990,337	GPR39- ACTR3-(bta-mir-2904-3)-(bta-mir-2887-2)	fatty acid content	20,506	[66]
2	112,415,910	SGPP2- MOGAT1- ACSL3- KCNE4	–	–	–
3	57,251,956	SNORA62	Residual feed intake	5336	[67]
3	115,361,435	SH3BP4-AGAP1	–	–	–
4	26,787,114	HDAC9	Somatic cell count	1500	[68]
4	26,787,114	HDAC9	Milk protein percentage	2517	[69]
7	55,541,968	NDFIP1 – ARHGAP26	Average Daily Gain	22,812	[13]
9	55,434,304	–	Rump angle	1686	[70]
9	55,434,304	–	Somatic cell count	1744	[71]
10	23,054,360	–	Teat placement	4634	[72]
			Udder attachment	4633	[72]
			Subcutaneous fat	7093	[73]
			Meat percentage	7094	[73]
			Somatic cell count	2701	[74]
			Carcass weight	4546	[75]
			Body weight (mature)	10,872	[76]
			Marbling score (EBV)	10,874	[76]
19	23,416,189	RPH3AL-DOC2B-WDR81-SERPINF2-SERPINIF1-RPA1-DPH1-OVCA2-HIC1-SRR-SGSM2	Somatic cell score	6225	[77]
21	60,437,376	ERICH1-SERPINA3–6	Shear force	20,814	[14]
23	25,276,633	TMEM14A-FBXO9-(BOLA-DQB) (HLA-DQB1)-(BOLA-DRB3)-BTNL2	Milk protein yield	3631	[78]
27	274,465	CLN8-ARHGEF10-KBTBD11-MYOM2	–	–	–
X	98,016,499	MAGED2-APEX2-RRAGB-FOXR2	–	–	–

ISSN: 1471-2164