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Table 2 Sequencing statistics

From: Whole genome analysis reveals the diversity and evolutionary relationships between necrotic enteritis-causing strains of Clostridium perfringens

Strain Chromosomal Contigs Total bp Max contig length (bp) Min contig length (bp) N50 Potential genes (Chromosomal genes) Accessory genes Unique genes Exclusively absent genes
0522A 31 3,417,203 799,085 1716 250,061 3165 1680 81 0
1207_CPER 95 3,206,961 279,830 204 85,634 2818 1511 28 0
2789STDY 48 3,321,076 2,127,284 377 903,119 2979 1566 32 0
96–7415 49 3,388,438 797,628 1527 244,647 3932 1651 86 0
98.78718–2 36 3,417,550 410,887 2042 196,455 3963 1772 35 3
ATCC3626 64 3,585,098 299,576 1616 91,764 4159 1760 83 5
ATCC13124 1 3,256,683 3,256,683 3,256,683 3,256,683 3719 1536 38 11
BER-NE33 30 3,349,933 3,345,877 4056 3,345,877 4107 1558 38 19
CP4 96 3,590,658 289,484 1282 83,876 3371 1500 211 42
EHE-NE7 11 3,257,283 2,079,954 4153 2,079,954 4368 1597 0 0
EHE-NE18 1 3, 474,200 3, 474,200 3, 474,200 3, 474,200 3965 1783 0 0
EUR-NE15 11 3,378,967 2,213,684 2319 2,213,684 4672 1755 21 4
F262 1 3,333,039 3,333,039 3,333,039 3,333,039 3793 1667 46 0
F4969 61 3,420,663 365,849 1632 113,358 3997 1605 85 8
FC2 24 3,297,593 986,908 4358 966,190 3867 1615 27 0
FORC_003 1 3,338,532 3,338,532 3,338,532 3,338,532 3060 1603 17 0
FORC_025 1 3,343,822 3,343,822 3,343,822 3,343,822 3038 1632 43 0
GNP-1 26 3,522,496 1,064003 2009 363,806 4185 1905 11 0
ITX1105-12MP 259 3,277,088 115,260 1547 22,062 4424 1866 0 0
JGS1495 59 3,412,610 383,044 1664 117,588 4003 1572 41 5
JGS1721 104 3,608,664 192,053 1519 80,514 4331 1660 50 8
JGS1987 72 3,751,199 270,422 1671 96,857 4397 1772 255 5
JGS4143 318 3,658,663 3,658,663 3,658,663 3,658,663 4124 1657 183 0
JJC 54 3,203,273 445,718 1595 98,246 3724 1533 24 1
JP55 1 3,347,300 3,347,300 3,347,300 3,347,300 3266 1618 21 0
JP838 1 3,530,414 3,530,414 3,530,414 3,530,414 3807 1734 114 4
K473 46 3,328,345 724,340 2307 158,573 6564 1316 130 91
NAG-NE1 106 3,315,837 2,659,148 2002 2,659,148 4994 1434 92 43
NAG-NE25 247 3,408,683 3,408,683 3,408,683 3,408,683 3953 1707 50 2
NAG-NE31 72 3371,019 1,031,391 2265 683,309 5198 1684 26 2
NCTC 8239 45 3,313,110 524,606 1602 146,935 3784 1520 33 6
NobL1 10 3,574,575 3,403,922 2168 3,403,922 4605 1679 53 5
PBD1 13 3,176,182 1,454,083 2985 572,872 5498 1509 44 40
PBS5 10 3,110,163 2,317,119 2322 2,317,119 4377 1578 18 7
PC5 11 3,103,348 2,196,352 2335 2,196,352 4284 1602 24 4
Pennington 35 3,501,064 1,037,768 2204 228,190 4158 1903 4 0
SAF-1 80 3,356,947 3,354,395 2552 3,354,395 3934 1605 37 0
SM101 1 2,897,393 2,897,393 2,897,393 2,897,393 3299 1136 62 93
Strain 11 35 3,197,244 515,326 4530 206,922 3662 1523 15 0
Strain 13 1 3,031,430 3,031,430 3,031,430 3,031,430 3438 1642 15 7
Strain 37 36 3,255,773 461,756 1501 148,687 3764 1593 11 0
Strain 48 33 3,250,386 670,855 1575 245,313 3738 1552 52 0
Strain 67 34 3,268,421 451,598 1501 243,534 3794 1626 21 0
SOM-NE34 25 3,418,437 3,355,569 62,868 3,355,569 3952 1720 1 0
SOM-NE35 35 3,364,015 1,180,705 2351 878,365 4722 1748 36 1
TAM-NE38 13 3,447,589 3,395,713 2411 3,395,713 4063 1801 0 0
TAM-NE40 15 3,452,011 3,395,271 2201 3,395,271 4086 1797 2 1
SYD-NE41 15 3,542,115 3,502,074 2002 3,502,074 4557 1790 36 5
TAM-NE42 96 3,355,605 3,353,147 2458 3,353,147 4015 1613 17 0
TAM-NE43 18 3,272,035 1,846,259 4695 1,846,259 3780 1596 27 0
TAM-NE46 33 3371,805 492,250 1589 278,745 4003 1791 0 0
T3381 67 3,335,304 352,891 2762 119,157 7258 1220 125 161
UDE 95–6812 25 3,366,442 1,428,911 2009 381,265 4004 1766 0 0
W1319 11 3,236,902 2,023,168 2290 2,023,168 4667 1568 35 9
WAL-14572 26 3,403,365 618,435 2272 307,728 3928 1721 50 1
Warren 14 3,561,701 3,425,489 2387 3,425,489 4408 1866 9 1
WER-NE36 113 3,283,756 3,281,264 2492 3,281,264 4536 1602 12 3