Table 2 Sequencing statistics
Strain | Chromosomal Contigs | Total bp | Max contig length (bp) | Min contig length (bp) | N50 | Potential genes (Chromosomal genes) | Accessory genes | Unique genes | Exclusively absent genes |
|---|---|---|---|---|---|---|---|---|---|
0522A | 31 | 3,417,203 | 799,085 | 1716 | 250,061 | 3165 | 1680 | 81 | 0 |
1207_CPER | 95 | 3,206,961 | 279,830 | 204 | 85,634 | 2818 | 1511 | 28 | 0 |
2789STDY | 48 | 3,321,076 | 2,127,284 | 377 | 903,119 | 2979 | 1566 | 32 | 0 |
96–7415 | 49 | 3,388,438 | 797,628 | 1527 | 244,647 | 3932 | 1651 | 86 | 0 |
98.78718–2 | 36 | 3,417,550 | 410,887 | 2042 | 196,455 | 3963 | 1772 | 35 | 3 |
ATCC3626 | 64 | 3,585,098 | 299,576 | 1616 | 91,764 | 4159 | 1760 | 83 | 5 |
ATCC13124 | 1 | 3,256,683 | 3,256,683 | 3,256,683 | 3,256,683 | 3719 | 1536 | 38 | 11 |
BER-NE33 | 30 | 3,349,933 | 3,345,877 | 4056 | 3,345,877 | 4107 | 1558 | 38 | 19 |
CP4 | 96 | 3,590,658 | 289,484 | 1282 | 83,876 | 3371 | 1500 | 211 | 42 |
EHE-NE7 | 11 | 3,257,283 | 2,079,954 | 4153 | 2,079,954 | 4368 | 1597 | 0 | 0 |
EHE-NE18 | 1 | 3, 474,200 | 3, 474,200 | 3, 474,200 | 3, 474,200 | 3965 | 1783 | 0 | 0 |
EUR-NE15 | 11 | 3,378,967 | 2,213,684 | 2319 | 2,213,684 | 4672 | 1755 | 21 | 4 |
F262 | 1 | 3,333,039 | 3,333,039 | 3,333,039 | 3,333,039 | 3793 | 1667 | 46 | 0 |
F4969 | 61 | 3,420,663 | 365,849 | 1632 | 113,358 | 3997 | 1605 | 85 | 8 |
FC2 | 24 | 3,297,593 | 986,908 | 4358 | 966,190 | 3867 | 1615 | 27 | 0 |
FORC_003 | 1 | 3,338,532 | 3,338,532 | 3,338,532 | 3,338,532 | 3060 | 1603 | 17 | 0 |
FORC_025 | 1 | 3,343,822 | 3,343,822 | 3,343,822 | 3,343,822 | 3038 | 1632 | 43 | 0 |
GNP-1 | 26 | 3,522,496 | 1,064003 | 2009 | 363,806 | 4185 | 1905 | 11 | 0 |
ITX1105-12MP | 259 | 3,277,088 | 115,260 | 1547 | 22,062 | 4424 | 1866 | 0 | 0 |
JGS1495 | 59 | 3,412,610 | 383,044 | 1664 | 117,588 | 4003 | 1572 | 41 | 5 |
JGS1721 | 104 | 3,608,664 | 192,053 | 1519 | 80,514 | 4331 | 1660 | 50 | 8 |
JGS1987 | 72 | 3,751,199 | 270,422 | 1671 | 96,857 | 4397 | 1772 | 255 | 5 |
JGS4143 | 318 | 3,658,663 | 3,658,663 | 3,658,663 | 3,658,663 | 4124 | 1657 | 183 | 0 |
JJC | 54 | 3,203,273 | 445,718 | 1595 | 98,246 | 3724 | 1533 | 24 | 1 |
JP55 | 1 | 3,347,300 | 3,347,300 | 3,347,300 | 3,347,300 | 3266 | 1618 | 21 | 0 |
JP838 | 1 | 3,530,414 | 3,530,414 | 3,530,414 | 3,530,414 | 3807 | 1734 | 114 | 4 |
K473 | 46 | 3,328,345 | 724,340 | 2307 | 158,573 | 6564 | 1316 | 130 | 91 |
NAG-NE1 | 106 | 3,315,837 | 2,659,148 | 2002 | 2,659,148 | 4994 | 1434 | 92 | 43 |
NAG-NE25 | 247 | 3,408,683 | 3,408,683 | 3,408,683 | 3,408,683 | 3953 | 1707 | 50 | 2 |
NAG-NE31 | 72 | 3371,019 | 1,031,391 | 2265 | 683,309 | 5198 | 1684 | 26 | 2 |
NCTC 8239 | 45 | 3,313,110 | 524,606 | 1602 | 146,935 | 3784 | 1520 | 33 | 6 |
NobL1 | 10 | 3,574,575 | 3,403,922 | 2168 | 3,403,922 | 4605 | 1679 | 53 | 5 |
PBD1 | 13 | 3,176,182 | 1,454,083 | 2985 | 572,872 | 5498 | 1509 | 44 | 40 |
PBS5 | 10 | 3,110,163 | 2,317,119 | 2322 | 2,317,119 | 4377 | 1578 | 18 | 7 |
PC5 | 11 | 3,103,348 | 2,196,352 | 2335 | 2,196,352 | 4284 | 1602 | 24 | 4 |
Pennington | 35 | 3,501,064 | 1,037,768 | 2204 | 228,190 | 4158 | 1903 | 4 | 0 |
SAF-1 | 80 | 3,356,947 | 3,354,395 | 2552 | 3,354,395 | 3934 | 1605 | 37 | 0 |
SM101 | 1 | 2,897,393 | 2,897,393 | 2,897,393 | 2,897,393 | 3299 | 1136 | 62 | 93 |
Strain 11 | 35 | 3,197,244 | 515,326 | 4530 | 206,922 | 3662 | 1523 | 15 | 0 |
Strain 13 | 1 | 3,031,430 | 3,031,430 | 3,031,430 | 3,031,430 | 3438 | 1642 | 15 | 7 |
Strain 37 | 36 | 3,255,773 | 461,756 | 1501 | 148,687 | 3764 | 1593 | 11 | 0 |
Strain 48 | 33 | 3,250,386 | 670,855 | 1575 | 245,313 | 3738 | 1552 | 52 | 0 |
Strain 67 | 34 | 3,268,421 | 451,598 | 1501 | 243,534 | 3794 | 1626 | 21 | 0 |
SOM-NE34 | 25 | 3,418,437 | 3,355,569 | 62,868 | 3,355,569 | 3952 | 1720 | 1 | 0 |
SOM-NE35 | 35 | 3,364,015 | 1,180,705 | 2351 | 878,365 | 4722 | 1748 | 36 | 1 |
TAM-NE38 | 13 | 3,447,589 | 3,395,713 | 2411 | 3,395,713 | 4063 | 1801 | 0 | 0 |
TAM-NE40 | 15 | 3,452,011 | 3,395,271 | 2201 | 3,395,271 | 4086 | 1797 | 2 | 1 |
SYD-NE41 | 15 | 3,542,115 | 3,502,074 | 2002 | 3,502,074 | 4557 | 1790 | 36 | 5 |
TAM-NE42 | 96 | 3,355,605 | 3,353,147 | 2458 | 3,353,147 | 4015 | 1613 | 17 | 0 |
TAM-NE43 | 18 | 3,272,035 | 1,846,259 | 4695 | 1,846,259 | 3780 | 1596 | 27 | 0 |
TAM-NE46 | 33 | 3371,805 | 492,250 | 1589 | 278,745 | 4003 | 1791 | 0 | 0 |
T3381 | 67 | 3,335,304 | 352,891 | 2762 | 119,157 | 7258 | 1220 | 125 | 161 |
UDE 95–6812 | 25 | 3,366,442 | 1,428,911 | 2009 | 381,265 | 4004 | 1766 | 0 | 0 |
W1319 | 11 | 3,236,902 | 2,023,168 | 2290 | 2,023,168 | 4667 | 1568 | 35 | 9 |
WAL-14572 | 26 | 3,403,365 | 618,435 | 2272 | 307,728 | 3928 | 1721 | 50 | 1 |
Warren | 14 | 3,561,701 | 3,425,489 | 2387 | 3,425,489 | 4408 | 1866 | 9 | 1 |
WER-NE36 | 113 | 3,283,756 | 3,281,264 | 2492 | 3,281,264 | 4536 | 1602 | 12 | 3 |