Modeling trophic dependencies and exchanges among insects’ bacterial symbionts in a host-simulated environment

BMC Genomics

Table 1 General genomic features of the obligatory and facultative symbionts of Bemisia tabaci used for the metabolic analysis

Symbiont	Host species	Co-occurring symbionts	Accession	Coverage	N50 (kb)	Size (Mb)	Number of Contigs	CDS^b	Number of ECs^c
Portiera	MED-Q1-Spain	HC [32]	CP003835.1	41× [454, I]^a	–	0.36	1	247	100
Cardinium	MED-Q1-Spain	PH [40]	GCA_000689375.1	> 600× [454, I]^a	612	1.01	11 + 1	739	112
Hamiltonella	MED-Q1-China	P [21]	GCA_000258345.1	145 x [I]^a	11.8	1.84	404	1806	398
Hamiltonella	MEAM1-USA	PR [71]	http://www.whiteflygenomics.org	NA[P, I]^a	–	1.74	1	1695	434
Rickettsia sp.	MEAM1-China	PH [39]	GCA_000265225.2	138×[I]^a	8.5	1.22	219	1397	247
Rickettsia sp.	MEAM1-USA	PH [71]	http://www.whiteflygenomics.org	NA[P,I]^a	–	1.38	1	1522	264
Wolbachia sp.	MED-Q2-Israel	PARW	PRJEB15492	30×[454, I]^a	6.3	1.25	297	1339	253

P, C, H, R, W represent Portiera, Cardinium, Hamiltonella (both genomes), Rickettsia (both genomes) and Wolbachia, respectively
^aTechnology used for sequencing: 454 GS-FLX Titanium [454], Illumina [I] and PacBio [P]
^bNumber of CDS obtained using the JGI annotation pipeline
^cFollowing annotation, filtering and manual curation

ISSN: 1471-2164