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Table 1 Summary of the sequencing data in aspects of quality, mapping results and duplicate reads for the two parents and their 10 progeny

From: Identification of recombination events in outbred species with next-generation sequencing data

Sample ID Clean PE reads (M) Clean Bases (Gb) HQ PE reads (M) HQ bases (Gb) Mapped reads (%) Uniquely mapped readsa (%) Duplicate readsb (%) Remained reads (M)
P1c 144.06 29.10 117.67 23.77 96.15 57.40 12.69 48.19
P2d 163.46 33.02 131.28 26.52 95.67 59.27 33.99 37.43
B35–2 54.45 13.72 48.41 12.20 97.33 55.55 7.03 50.27
C25–3 51.93 13.09 46.09 11.60 97.78 55.91 5.26 51.80
C3–2 48.75 12.29 43.48 10.96 97.84 55.55 5.54 51.34
C32–2 52.76 13.29 46.86 11.81 97.85 55.84 3.92 52.50
C5–3 56.36 14.20 50.19 12.65 97.69 55.66 5.26 51.51
3–12 55.94 14.09 52.09 13.13 99.58 57.27 10.19 51.22
3–14 53.10 13.37 47.56 11.98 99.47 56.05 17.32 46.10
3–15 55.79 14.05 52.02 13.11 98.52 60.15 11.78 52.28
3–16 58.35 14.70 54.67 13.78 98.84 57.08 20.49 44.86
3–18 58.96 14.85 55.15 13.90 98.40 57.01 22.05 43.73
  1. aThe percentage of almost uniquely mapped reads in all mapped reads for a sample
  2. bThe percentage of duplicate reads in uniquely mapped reads for a sample
  3. cP1, the female parent P. deltoides
  4. dP2, the male parent P. simonii