Gene/Polymorphism name | CDS and promotor site | P-value | -Log of P | Polymorphism | Effect in % | Observationsa | ||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
CBF-A3_SNP1 | 222 | 6.28E-10 | 9.20 | A | C | Â | 15.01 | 0.00 | Â | 193 | 42 | Â |
CBF-A3_SNP2 | 263 | 6.28E-10 | 9.20 | C | G | Â | 15.01 | 0.00 | Â | 193 | 42 | Â |
CBF-A3_SNP3 | 367 | 6.28E-10 | 9.20 | A | G | Â | 15.01 | 0.00 | Â | 193 | 42 | Â |
CBF-A3_SNP4 | 407 | 6.28E-10 | 9.20 | C | T | Â | 15.01 | 0.00 | Â | 193 | 42 | Â |
CBF-A5_indel1 | −83 | 6.00E-3 | 2.22 | C | – |  | −4.52 | 0.00 |  | 141 | 84 |  |
CBF-A10_SNP1 | 471 | 6.28E-10 | 9.20 | C | T | Â | 15.01 | 0.00 | Â | 193 | 42 | Â |
CBF-A10_SNP2 | 518 | 6.28E-10 | 9.20 | G | C | Â | 15.01 | 0.00 | Â | 193 | 42 | Â |
CBF-A13_SNP1 | −11 | 6.28E-10 | 9.20 | T | C |  | 15.01 | 0.00 |  | 193 | 42 |  |
CBF-A13_indel3 | 19 | 6.28E-10 | 9.20 | T | – |  | 15.01 | 0.00 |  | 193 | 42 |  |
CBF-A13_SNP2 | 92 | 6.28E-10 | 9.20 | G | A | Â | 15.01 | 0.00 | Â | 193 | 42 | Â |
CBF-A13_indel2 | 133 | 6.28E-10 | 9.20 | – | C |  | 15.01 | 0.00 |  | 193 | 42 |  |
134 | 6.28E-10 | 9.20 | – | G |  | 15.01 | 0.00 |  | 193 | 42 |  | |
135 | 6.28E-10 | 9.20 | – | T |  | 15.01 | 0.00 |  | 193 | 42 |  | |
136 | 6.28E-10 | 9.20 | – | G |  | 15.01 | 0.00 |  | 193 | 42 |  | |
137 | 6.28E-10 | 9.20 | – | C |  | 15.01 | 0.00 |  | 193 | 42 |  | |
138 | 6.28E-10 | 9.20 | – | G |  | 15.01 | 0.00 |  | 193 | 42 |  | |
139 | 6.28E-10 | 9.20 | – | G |  | 15.01 | 0.00 |  | 193 | 42 |  | |
140 | 6.28E-10 | 9.20 | – | C | A | 15.22 | 0.00 | 6.75 | 193 | 41 | 1 | |
141 | 6.28E-10 | 9.20 | – | G |  | 15.01 | 0.00 |  | 193 | 42 |  | |
142 | 6.28E-10 | 9.20 | – | C |  | 15.01 | 0.00 |  | 193 | 42 |  | |
143 | 6.28E-10 | 9.20 | – | A |  | 15.01 | 0.00 |  | 193 | 42 |  | |
144 | 6.28E-10 | 9.20 | – | G |  | 15.01 | 0.00 |  | 193 | 42 |  | |
145 | 6.28E-10 | 9.20 | – | G |  | 15.01 | 0.00 |  | 193 | 42 |  | |
146 | 6.28E-10 | 9.20 | – | G |  | 15.01 | 0.00 |  | 193 | 42 |  | |
147 | 6.28E-10 | 9.20 | – | G |  | 15.01 | 0.00 |  | 193 | 42 |  | |
148 | 6.28E-10 | 9.20 | – | C |  | 15.01 | 0.00 |  | 193 | 42 |  | |
149 | 6.28E-10 | 9.20 | – | A |  | 15.01 | 0.00 |  | 193 | 42 |  | |
150 | 6.28E-10 | 9.20 | – | A |  | 15.01 | 0.00 |  | 193 | 42 |  | |
151 | 6.28E-10 | 9.20 | – | C |  | 15.01 | 0.00 |  | 193 | 42 |  | |
152 | 6.28E-10 | 9.20 | – | G |  | 15.01 | 0.00 |  | 193 | 42 |  | |
153 | 6.28E-10 | 9.20 | – | C |  | 15.01 | 0.00 |  | 193 | 42 |  | |
154 | 6.28E-10 | 9.20 | – | G |  | 15.01 | 0.00 |  | 193 | 42 |  | |
155 | 4.00E-10 | 9.40 | – | G |  | 15.01 | 0.00 |  | 193 | 42 |  | |
156 | 6.28E-10 | 9.20 | – | G |  | 15.01 | 0.00 |  | 193 | 42 |  | |
157 | 6.28E-10 | 9.20 | – | G |  | 15.01 | 0.00 |  | 193 | 42 |  | |
158 | 6.28E-10 | 9.20 | – | C |  | 15.01 | 0.00 |  | 193 | 42 |  | |
159 | 6.28E-10 | 9.20 | – | G |  | 15.01 | 0.00 |  | 193 | 42 |  | |
160 | 6.28E-10 | 9.20 | – | G |  | 15.01 | 0.00 |  | 193 | 42 |  | |
161 | 6.28E-10 | 9.20 | – | T |  | 15.01 | 0.00 |  | 193 | 42 |  | |
162 | 6.28E-10 | 9.20 | – | G |  | 15.01 | 0.00 |  | 193 | 42 |  | |
163 | 6.28E-10 | 9.20 | – | G |  | 15.01 | 0.00 |  | 193 | 42 |  | |
164 | 6.28E-10 | 9.20 | – | G |  | 15.01 | 0.00 |  | 193 | 42 |  | |
CBF-A13_SNP3 | 294 | 6.28E-10 | 9.20 | C | A | Â | 15.01 | 0.00 | Â | 193 | 42 | Â |
CBF-A14_indel1 | −506 | 6.28E-10 | 9.20 | G | – |  | 15.01 | 0.00 |  | 193 | 42 |  |
− 505 | 6.28E-10 | 9.20 | T | – |  | 15.01 | 0.00 |  | 193 | 42 |  | |
− 504 | 6.28E-10 | 9.20 | G | – |  | 15.01 | 0.00 |  | 193 | 42 |  | |
−503 | 6.28E-10 | 9.20 | A | – |  | 15.01 | 0.00 |  | 193 | 42 |  | |
− 502 | 6.28E-10 | 9.20 | G | – |  | 15.01 | 0.00 |  | 193 | 42 |  | |
−501 | 6.28E-10 | 9.20 | T | – |  | 15.01 | 0.00 |  | 193 | 42 |  | |
−500 | 6.28E-10 | 9.20 | G | – |  | 15.01 | 0.00 |  | 193 | 42 |  | |
− 499 | 6.28E-10 | 9.20 | T | – |  | 15.01 | 0.00 |  | 193 | 42 |  | |
−498 | 6.28E-10 | 9.20 | G | – |  | 15.01 | 0.00 |  | 193 | 42 |  | |
− 497 | 6.28E-10 | 9.20 | A | – |  | 15.01 | 0.00 |  | 193 | 42 |  | |
−496 | 6.28E-10 | 9.20 | G | – |  | 15.01 | 0.00 |  | 193 | 42 |  | |
− 495 | 6.28E-10 | 9.20 | T | – |  | 15.01 | 0.00 |  | 193 | 42 |  | |
CBF-A14_SNP1 | − 449 | 6.28E-10 | 9.20 | T | C |  | 15.01 | 0.00 |  | 193 | 42 |  |
CBF-A14_SNP2 | − 158 | 6.28E-10 | 9.20 | T | C |  | 15.01 | 0.00 |  | 193 | 42 |  |
CBF-A14_SNP3 | −53 | 6.57E-10 | 9.18 | C | G |  | 15.01 | 0.00 |  | 193 | 42 |  |
CBF-A14_SNP4 | 576 | 6.28E-10 | 9.20 | G | A | Â | 15.01 | 0.00 | Â | 193 | 42 | Â |
CBF-A15_SNP1 | 84 | 6.28E-10 | 9.20 | C | T | Â | 15.01 | 0.00 | Â | 193 | 42 | Â |
CBF-A15_SNP2 | 243 | 6.28E-10 | 9.20 | T | C | Â | 15.01 | 0.00 | Â | 193 | 42 | Â |
CBF-A15_SNP3 | 293 | 6.28E-10 | 9.20 | C | T | Â | 15.01 | 0.00 | Â | 193 | 42 | Â |
CBF-A15_SNP4 | 397 | 6.28E-10 | 9.20 | G | A | Â | 15.01 | 0.00 | Â | 193 | 42 | Â |
CBF-A15_indel1 | 503 | 6.28E-10 | 9.20 | T | – |  | 15.01 | 0.00 |  | 193 | 42 |  |
504 | 6.28E-10 | 9.20 | C | – |  | 15.01 | 0.00 |  | 193 | 42 |  | |
505 | 6.28E-10 | 9.20 | G | – |  | 15.01 | 0.00 |  | 193 | 42 |  | |
506 | 6.28E-10 | 9.20 | T | – |  | 15.01 | 0.00 |  | 193 | 42 |  | |
507 | 6.28E-10 | 9.20 | C | – |  | 15.01 | 0.00 |  | 193 | 42 |  | |
508 | 6.28E-10 | 9.20 | G | – |  | 15.01 | 0.00 |  | 193 | 42 |  | |
509 | 6.28E-10 | 9.20 | T | – |  | 15.01 | 0.00 |  | 193 | 42 |  | |
510 | 6.28E-10 | 9.20 | C | – |  | 15.01 | 0.00 |  | 193 | 42 |  | |
511 | 6.28E-10 | 9.20 | G | – |  | 15.01 | 0.00 |  | 193 | 42 |  | |
CBF-A15_SNP5 | 694 | 6.28E-10 | 9.20 | A | G | Â | 15.01 | 0.00 | Â | 193 | 42 | Â |
CBF-A15_SNP6 | 716 | 6.28E-10 | 9.20 | C | G | Â | 15.01 | 0.00 | Â | 193 | 42 | Â |
PPD-D1_indel1 | 1266 | 3.77E-2 | 1.42 | – | C |  | 3.96 | 0.00 |  | 68 | 166 |  |
1267 | 3.77E-2 | 1.42 | – | G |  | 3.96 | 0.00 |  | 68 | 166 |  | |
1268 | 3.77E-2 | 1.42 | – | T |  | 3.96 | 0.00 |  | 68 | 166 |  | |
1269 | 3.77E-2 | 1.42 | – | C |  | 3.96 | 0.00 |  | 68 | 166 |  | |
1270 | 3.77E-2 | 1.42 | – | G |  | 3.96 | 0.00 |  | 68 | 166 |  | |
VRN-A1_SNP1 | 349 | 3.03E-4 | 3.52 | C | T | Y | 0.00 | 1.35 | 0.11 | 24 | 2 | 209 |
VRN-B3_SNP1 | 19 | 3.76E-2 | 1.43 | C | G | Â | 3.05 | 0.00 | Â | 105 | 128 | Â |