|
QTL type
|
Cell type
|
maximum number of eSNPs tested in a chromosome
|
Sourced TAD set
|
number of significant eGene in TAD
|
number of furthermost and most-significant cis-QTL-eGene in the same TAD
|
Chi-Square test
|
|---|
|
Expected
|
observed
|
value
|
P-value
|
|---|
|
aseQTL
|
white blood
|
1,057,269
|
hg18:hESC
|
13,302
|
1406.379224
|
6375
|
17,553.7238
|
0
|
|
hg18:IMR90
|
13,790
|
1457.973951
|
7273
|
23,192.8204
|
0
|
|
mm9:mESC
|
13,641
|
1442.220643
|
7682
|
26,996.4562
|
0
|
|
mm9:cortex
|
13,150
|
1390.308735
|
8670
|
38,116.6453
|
0
|
|
mm10:liver
|
12,013
|
1270.09725
|
5101
|
11,554.8757
|
0
|
|
canfam3:liver
|
13,046
|
1379.313137
|
6086
|
16,060.8209
|
0
|
|
milk
|
1,153,815
|
hg18:hESC
|
9553
|
1102.23947
|
3862
|
6909.82168
|
0
|
|
hg18:IMR90
|
10,019
|
1156.007249
|
4550
|
9964.63198
|
0
|
|
mm9:mESC
|
9706
|
1119.892839
|
4764
|
11,857.8462
|
0
|
|
mm9:cortex
|
9317
|
1075.009436
|
5608
|
19,114.2541
|
0
|
|
mm10:liver
|
8692
|
1002.895998
|
2931
|
3706.85001
|
0
|
|
canfam3:liver
|
9638
|
1112.046897
|
3863
|
6805.23726
|
0
|
|
eQTL
|
white blood
|
8964
|
hg18:hESC
|
327
|
0.2931228
|
114
|
44,108.66
|
0
|
|
hg18:IMR90
|
340
|
0.304776
|
125
|
51,017.4649
|
0
|
|
mm9:mESC
|
322
|
0.2886408
|
125
|
53,883.3149
|
0
|
|
mm9:cortex
|
305
|
0.273402
|
123
|
55,090.3719
|
0
|
|
mm10:liver
|
284
|
0.2545776
|
91
|
32,346.6467
|
0
|
|
canfam3:liver
|
330
|
0.295812
|
119
|
47,633.917
|
0
|
|
milk
|
2463
|
hg18:hESC
|
343
|
0.0844809
|
24
|
6770.19366
|
0
|
|
hg18:IMR90
|
348
|
0.0857124
|
25
|
7241.9128
|
0
|
|
mm9:mESC
|
356
|
0.0876828
|
34
|
13,115.9732
|
0
|
|
mm9:cortex
|
323
|
0.0795549
|
36
|
16,218.7166
|
0
|
|
mm10:liver
|
340
|
0.083742
|
23
|
6271.10507
|
0
|
|
canfam3:liver
|
362
|
0.0891606
|
22
|
5384.49588
|
0
|
- The linearly-furthermost, and most-significant, aseQTL and eQTL for each eGene all have a P-value less than 10−8 in aseQTL/eQTL mapping
