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Table 1 Quality metrics of transcripts in the gill of Scylla paramamosain

From: Transcriptomic analysis of adaptive mechanisms in response to sudden salinity drop in the mud crab, Scylla paramamosain

Sample Total Number Total Length (bp) Mean Length N50 N70 N90 GC(%)
CK_1 93,877 54,675,298 582 952 445 232 45.50
CK_2 100,075 57,680,722 576 938 436 230 45.61
CK_3 97,185 52,573,783 540 803 400 225 45.75
LS_1 87,582 49,398,653 564 885 424 229 45.75
LS_2 97,564 51,685,899 529 777 390 222 45.88
LS_3 81,111 58,440,218 720 1354 617 262 46.89
  1. Sample: Sample name; Total Number: The total number of transcripts; Total Length: The read length of transcripts; Mean Length: The average length of transcripts; N50: The N50 length was used to determine the assembly continuity such that the higher the better. N50 is a weighted median statistic such that 50% of the total length is contained in the unigenes that are equal to or larger than this value. N70: Similar to the N50; N90: Similar to the N50. GC (%): the percentage of G and C bases in all transcripts