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Fig. 2 | BMC Genomics

Fig. 2

From: Comparative genomics reveals phylogenetic distribution patterns of secondary metabolites in Amycolatopsis species

Fig. 2

Presence/absence of GCFs in Amycolatopsis strains. Each column in the map stands for a gene cluster family, each row stands for a certain Amycolatopsis strain, respective to the phylogeny in Fig. 1a. The presence of a GCF member in a strain is highlighted by a color code according to their class: PKSs – orange, PKS/NRPS-hybrids – light blue, NRPSs – dark green, RiPPs – yellow, Terpenes – purple, all other identified BGC classes – dark blue. For each class the GCFs are sorted by abundance, from high to low abundance. The absence of the respective GCF member is shown in grey. The dendrogram (UPGMA clustering with dice similarity coefficient) is derived from a similarity matrix containing information on the presence/absence of BGCs

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